-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1574

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1359, 1449
Couldn't classify 1996, 2076
Sorry, prediction snap_scaffold_1574-snap.1-T1 fails validation.
(GCT)	 AG	1359-1449	GT	TGG
(GCC)	 AG	1572-1730	GT	AGG
(GTG)	 AG	1996-2076	GT	AGG
-recovered snap_scaffold_1574-snap.1-T1, internal, 1359, 1449
-recovered snap_scaffold_1574-snap.1-T1, internal, 1572, 1730
-recovered snap_scaffold_1574-snap.1-T1, internal, 1996, 2076
Valid prediction for GlimmerHMM_glimmerT_62716-T1
Couldn't classify 1336, 1476
Couldn't classify 1996, 2076
Sorry, prediction GeneMark_model.109492_t fails validation.
(CTG)	 AG	1336-1476	GT	CTG
(GCC)	 AG	1572-1730	GT	AGG
(GTG)	 AG	1996-2076	GT	AGG
-recovered GeneMark_model.109492_t, internal, 1336, 1476
-recovered GeneMark_model.109492_t, internal, 1572, 1730
-recovered GeneMark_model.109492_t, internal, 1996, 2076
Couldn't classify 1996, 2076
Sorry, prediction Augustus_model.g41740.t1 fails validation.
(ATG)	 GG	1381-1476	GT	CTG
(GCC)	 AG	1572-1730	GT	AGG
(GTG)	 AG	1996-2076	GT	AGG
-recovered Augustus_model.g41740.t1, initial, 1381, 1476
-recovered Augustus_model.g41740.t1, internal, 1572, 1730
-recovered Augustus_model.g41740.t1, internal, 1996, 2076

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2197
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support