-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1572

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1440, 1523
Sorry, prediction GeneMark_model.109490_t fails validation.
(ATG)	 TT	331-599	GT	AGG
(GAC)	 AG	1175-1318	GT	TGG
(GTA)	 AG	1440-1523	GT	TGG
-recovered GeneMark_model.109490_t, initial, 331, 599
-recovered GeneMark_model.109490_t, internal, 1175, 1318
-recovered GeneMark_model.109490_t, internal, 1440, 1523
Couldn't classify 165, 223
Sorry, prediction Augustus_model.g41739.t1 fails validation.
(CTG)	 AG	165-223	GT	CTG
(CGA)	 AG	354-599	GT	AGG
(GAC)	 AG	1175-1318	GT	TGG
(GTA)	 AG	1440-1527	GA	GAG
-recovered Augustus_model.g41739.t1, terminal, 1440, 1527
-recovered Augustus_model.g41739.t1, internal, 165, 223
-recovered Augustus_model.g41739.t1, internal, 354, 599
-recovered Augustus_model.g41739.t1, internal, 1175, 1318
Couldn't classify 165, 223
Couldn't classify 1440, 1523
Sorry, prediction snap_scaffold_1572-snap.1-T1 fails validation.
(CTG)	 AG	165-223	GT	CTG
(CGA)	 AG	354-599	GT	AGG
(GAC)	 AG	1175-1318	GT	TGG
(GTA)	 AG	1440-1523	GT	TGG
-recovered snap_scaffold_1572-snap.1-T1, internal, 165, 223
-recovered snap_scaffold_1572-snap.1-T1, internal, 354, 599
-recovered snap_scaffold_1572-snap.1-T1, internal, 1175, 1318
-recovered snap_scaffold_1572-snap.1-T1, internal, 1440, 1523
Couldn't classify 403, 599
Couldn't classify 1440, 1491
Sorry, prediction pasa_asmbl_15992.p1 fails validation.
(AAC)	 TG	403-599	GT	AGG
(GAC)	 AG	1175-1318	GT	TGG
(GTA)	 AG	1440-1491	GC	AGG
-recovered pasa_asmbl_15992.p1, internal, 1175, 1318
-recovered pasa_asmbl_15992.p1, internal, 1440, 1491
Couldn't classify 1440, 1523
Sorry, prediction GlimmerHMM_glimmerT_62715-T1 fails validation.
(ATG)	 TT	331-599	GT	AGG
(GAC)	 AG	1175-1318	GT	TGG
(GTA)	 AG	1440-1523	GT	TGG
-recovered GlimmerHMM_glimmerT_62715-T1, initial, 331, 599
-recovered GlimmerHMM_glimmerT_62715-T1, internal, 1175, 1318
-recovered GlimmerHMM_glimmerT_62715-T1, internal, 1440, 1523

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1572-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2200
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support