-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1570

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 107
Sorry, prediction GeneMark_model.109489_t fails validation.
(GAG)	 AG	36-107	GT	TGG
(GTC)	 AG	1688-1810	GT	ATG
(AGT)	 AG	1839-1847	GT	GAG
(AGA)	 AG	1869-1883	GT	GTG
(TGA)	 AG	1905-1925	GT	GAG
(TGT)	 AG	1949-1969	GT	AAG
(AGA)	 AG	1993-2002	AG	AGA
-recovered GeneMark_model.109489_t, terminal, 1993, 2002
-recovered GeneMark_model.109489_t, internal, 36, 107
-recovered GeneMark_model.109489_t, internal, 1688, 1810
-recovered GeneMark_model.109489_t, internal, 1839, 1847
-recovered GeneMark_model.109489_t, internal, 1869, 1883
-recovered GeneMark_model.109489_t, internal, 1905, 1925
-recovered GeneMark_model.109489_t, internal, 1949, 1969

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2203
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support