-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_157

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40847.t1
Valid prediction for GlimmerHMM_glimmerT_61416-T1
Valid prediction for snap_scaffold_157-snap.4-T1
Valid prediction for GeneMark_model.106772_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61415-T1
Couldn't classify 12062, 12133
Sorry, prediction Augustus_model.g40846.t1 fails validation.
(ATG)	 GC	4114-4122	GT	TGG
(GAT)	 AG	11645-11795	GT	CCG
(CTC)	 AG	12062-12133		GC
-recovered Augustus_model.g40846.t1, initial, 4114, 4122
-recovered Augustus_model.g40846.t1, internal, 11645, 11795
Valid prediction for GlimmerHMM_glimmerT_61417-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61417-T1 481-985-terminal-1 is invalid.
Valid prediction for GeneMark_model.106771_t
Valid prediction for snap_scaffold_157-snap.3-T1
Valid prediction for snap_scaffold_157-snap.2-T1
Valid prediction for snap_scaffold_157-snap.1-T1
Couldn't classify 515, 550
Sorry, prediction GeneMark_model.106773_t fails validation.
(GAC)	 AG	515-550	GT	GGG
(GAG)	 AG	575-586	GT	GGG
(AAG)	 AG	616-627	GT	GGG
(GGC)	 AG	650-676	GT	GGG
(GAA)	 AG	699-728	GT	GGG
(GCG)	 AG	749-793	GT	AGG
(GAG)	 AG	818-829	GT	GGG
(GAG)	 AG	855-1005	GG	AGG
-recovered GeneMark_model.106773_t, terminal, 855, 1005
-recovered GeneMark_model.106773_t, internal, 515, 550
-recovered GeneMark_model.106773_t, internal, 575, 586
-recovered GeneMark_model.106773_t, internal, 616, 627
-recovered GeneMark_model.106773_t, internal, 650, 676
-recovered GeneMark_model.106773_t, internal, 699, 728
-recovered GeneMark_model.106773_t, internal, 749, 793
-recovered GeneMark_model.106773_t, internal, 818, 829
Couldn't classify 11645, 11923
Couldn't classify 12062, 12117
Sorry, prediction GeneMark_model.106770_t fails validation.
(GAT)	 AG	11645-11923	GT	CCG
(CTC)	 AG	12062-12117	GT	TCG
-recovered GeneMark_model.106770_t, internal, 11645, 11923
-recovered GeneMark_model.106770_t, internal, 12062, 12117

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11112, rend_intergenic: 8403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12133
-exon list size: 66


building trellis

1.5    
2.9    
4.4    
5.9    
7.4    
8.8    
10.3    
11.8    
13.2    
14.7    
16.2    
17.6    
19.1    
20.6    
22.1    
23.5    
25.0    
26.5    
27.9    
29.4    
30.9    
32.4    
33.8    
35.3    
36.8    
38.2    
39.7    
41.2    
42.6    
44.1    
45.6    
47.1    
48.5    
50.0    
51.5    
52.9    
54.4    
55.9    
57.4    
58.8    
60.3    
61.8    
63.2    
64.7    
66.2    
67.6    
69.1    
70.6    
72.1    
73.5    
75.0    
76.5    
77.9    
79.4    
80.9    
82.4    
83.8    
85.3    
86.8    
88.2    
89.7    
91.2    
92.6    
94.1    
95.6    
97.1    
98.5    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 11112, rend_intergenic: 8403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support