-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1567

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2078, 2170
Sorry, prediction Augustus_model.g41738.t1 fails validation.
(ATG)	 TT	1155-1262	GT	AGG
(GAC)	 AG	2078-2170	GT	AGG
-recovered Augustus_model.g41738.t1, initial, 1155, 1262
-recovered Augustus_model.g41738.t1, internal, 2078, 2170
Couldn't classify 839, 976
Couldn't classify 2078, 2170
Sorry, prediction snap_scaffold_1567-snap.1-T1 fails validation.
(GAA)	 AG	839-976	GT	GGG
(GCA)	 AG	1146-1262	GT	AGG
(GAC)	 AG	2078-2170	GT	AGG
-recovered snap_scaffold_1567-snap.1-T1, internal, 839, 976
-recovered snap_scaffold_1567-snap.1-T1, internal, 1146, 1262
-recovered snap_scaffold_1567-snap.1-T1, internal, 2078, 2170
Couldn't classify 268, 586
Couldn't classify 1150, 1262
Sorry, prediction GeneMark_model.109487_t fails validation.
(GCT)	 AG	268-586	GT	AGG
(ACC)	 AG	624-782	GT	TGG
(GCA)	 AG	1150-1262	GT	AGG
-recovered GeneMark_model.109487_t, internal, 268, 586
-recovered GeneMark_model.109487_t, internal, 624, 782
-recovered GeneMark_model.109487_t, internal, 1150, 1262

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2207
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support