-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1566

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1566-snap.2-T1
Couldn't classify 308, 443
Sorry, prediction Augustus_model.g41737.t1 fails validation.
(GAC)	 AG	308-443	GT	TGG
(CAG)	 AG	1687-1769	AG	AGA
-recovered Augustus_model.g41737.t1, terminal, 1687, 1769
-recovered Augustus_model.g41737.t1, internal, 308, 443
Couldn't classify 49, 223
Sorry, prediction GeneMark_model.109486_t fails validation.
(GTC)	 AG	49-223	GT	CGG
(GAC)	 AG	308-447	GT	CAG
(GAG)	 AG	1582-1654	GA	AAG
-recovered GeneMark_model.109486_t, terminal, 1582, 1654
-recovered GeneMark_model.109486_t, internal, 49, 223
-recovered GeneMark_model.109486_t, internal, 308, 447

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 463, 538
Couldn't classify 1977, 2186
Sorry, prediction snap_scaffold_1566-snap.1-T1 fails validation.
(AGG)	 AG	463-538	GT	GGG
(GGG)	 AG	1800-1940	GT	GCG
(GTT)	 AG	1977-2186	GT	AGG
-recovered snap_scaffold_1566-snap.1-T1, internal, 463, 538
-recovered snap_scaffold_1566-snap.1-T1, internal, 1800, 1940
-recovered snap_scaffold_1566-snap.1-T1, internal, 1977, 2186

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1750, rend_intergenic: 73  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2212
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1750, rend_intergenic: 73  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support