-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1565

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 553, 619
Sorry, prediction GeneMark_model.109484_t fails validation.
(TGG)	 AG	553-619	GT	GAG
(GGA)	 AG	700-711	GT	ATG
(GGA)	 AG	736-885	GT	GGG
(ATA)	 AG	910-934	CA	AGC
-recovered GeneMark_model.109484_t, terminal, 910, 934
-recovered GeneMark_model.109484_t, internal, 553, 619
-recovered GeneMark_model.109484_t, internal, 700, 711
-recovered GeneMark_model.109484_t, internal, 736, 885
Couldn't classify 553, 606
Sorry, prediction snap_scaffold_1565-snap.1-T1 fails validation.
(TGG)	 AG	553-606	GT	AGG
(TTT)	 AG	1798-1866	GT	ACG
(GCT)	 AG	1900-2089	GA	AGG
-recovered snap_scaffold_1565-snap.1-T1, terminal, 1900, 2089
-recovered snap_scaffold_1565-snap.1-T1, internal, 553, 606
-recovered snap_scaffold_1565-snap.1-T1, internal, 1798, 1866

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 171, 515
Couldn't classify 1146, 1228
Sorry, prediction snap_scaffold_1565-snap.2-T1 fails validation.
(GTG)	 AG	171-515	GT	GGG
(TTG)	 AG	1146-1228	GT	TGG
-recovered snap_scaffold_1565-snap.2-T1, internal, 171, 515
-recovered snap_scaffold_1565-snap.2-T1, internal, 1146, 1228
Valid prediction for GeneMark_model.109485_t
add_exon() Sorry, GeneMark_model.109485_t 171-523-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62714-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62714-T1 171-523-terminal-1 is invalid.
Couldn't classify 1146, 1228
Sorry, prediction Augustus_model.g41736.t1 fails validation.
(ATG)	 TG	137-515	GT	GGG
(TTG)	 AG	1146-1228	GT	TGG
-recovered Augustus_model.g41736.t1, initial, 137, 515
-recovered Augustus_model.g41736.t1, internal, 1146, 1228

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2089, rend_intergenic: 985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2212
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2089, rend_intergenic: 985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support