-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_156 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106768_t Valid prediction for GeneMark_model.106766_t Valid prediction for snap_scaffold_156-snap.4-T1 Couldn't classify 222, 341 Sorry, prediction Augustus_model.g40845.t1 fails validation. (ACC) AG 222-341 GT CAG (TCG) AG 1255-1453 GT AAG (GTT) AG 2168-2374 GT AGG (GTG) AG 3683-3910 GT CGG (CTG) AG 4273-4405 GT AGG (GTC) AG 4621-4801 GT AGG (GGC) AG 5148-5441 GT AGG (AAC) AG 6284-6352 GT AGG (GGA) AG 6722-7196 GT AGG (GTA) AG 8402-8579 GT AGG (CAT) AG 8725-8923 GT AGG (AAA) AG 10710-10721 CC GAC -recovered Augustus_model.g40845.t1, terminal, 10710, 10721 -recovered Augustus_model.g40845.t1, internal, 222, 341 -recovered Augustus_model.g40845.t1, internal, 1255, 1453 -recovered Augustus_model.g40845.t1, internal, 2168, 2374 -recovered Augustus_model.g40845.t1, internal, 3683, 3910 -recovered Augustus_model.g40845.t1, internal, 4273, 4405 -recovered Augustus_model.g40845.t1, internal, 4621, 4801 -recovered Augustus_model.g40845.t1, internal, 5148, 5441 -recovered Augustus_model.g40845.t1, internal, 6284, 6352 -recovered Augustus_model.g40845.t1, internal, 6722, 7196 -recovered Augustus_model.g40845.t1, internal, 8402, 8579 -recovered Augustus_model.g40845.t1, internal, 8725, 8923 Couldn't classify 3856, 3910 Couldn't classify 5148, 5210 Sorry, prediction pasa_asmbl_15985.p1 fails validation. (CCC) GA 3856-3910 GT CGG (CTG) AG 4273-4405 GT AGG (GTC) AG 4621-4801 GT AGG (GGC) AG 5148-5210 CC CCC -recovered pasa_asmbl_15985.p1, internal, 4273, 4405 -recovered pasa_asmbl_15985.p1, internal, 4621, 4801 Valid prediction for GlimmerHMM_glimmerT_61414-T1 Couldn't classify 6719, 6959 Sorry, prediction pasa_asmbl_15986.p1 fails validation. (CAG) TG 6719-6959 GT CGG (GTA) AG 8402-8579 GT AGG (CAT) AG 8725-8923 GT AGG (AAA) AG 10710-10721 CC GAC -recovered pasa_asmbl_15986.p1, terminal, 10710, 10721 -recovered pasa_asmbl_15986.p1, internal, 8402, 8579 -recovered pasa_asmbl_15986.p1, internal, 8725, 8923 Couldn't classify 222, 341 Sorry, prediction snap_scaffold_156-snap.1-T1 fails validation. (ACC) AG 222-341 GT CAG (TCG) AG 1255-1453 GT AAG (GTT) AG 2168-2374 GT AGG (GTG) AG 3683-3910 GT CGG (CTG) AG 4273-4405 GT AGG (GTC) AG 4621-4801 GT AGG (GGC) AG 5148-5441 GT AGG (AAC) AG 6284-6352 GT AGG (GGA) AG 6722-7196 GT AGG (GTA) AG 8402-8579 GT AGG (GCT) AG 8590-8968 CA GAC -recovered snap_scaffold_156-snap.1-T1, terminal, 8590, 8968 -recovered snap_scaffold_156-snap.1-T1, internal, 222, 341 -recovered snap_scaffold_156-snap.1-T1, internal, 1255, 1453 -recovered snap_scaffold_156-snap.1-T1, internal, 2168, 2374 -recovered snap_scaffold_156-snap.1-T1, internal, 3683, 3910 -recovered snap_scaffold_156-snap.1-T1, internal, 4273, 4405 -recovered snap_scaffold_156-snap.1-T1, internal, 4621, 4801 -recovered snap_scaffold_156-snap.1-T1, internal, 5148, 5441 -recovered snap_scaffold_156-snap.1-T1, internal, 6284, 6352 -recovered snap_scaffold_156-snap.1-T1, internal, 6722, 7196 -recovered snap_scaffold_156-snap.1-T1, internal, 8402, 8579 Sorry, intron length (9) is less than minimum required (10) Couldn't classify 1243, 1453 Couldn't classify 2168, 2271 Sorry, prediction pasa_asmbl_15989.p1 fails validation. (CCT) CC 1243-1453 GT AAG (GTT) AG 2168-2271 CC CCC -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106767_t Couldn't classify 10826, 10965 Sorry, prediction snap_scaffold_156-snap.2-T1 fails validation. (ATG) AG 9314-9454 GT GGG (GCC) AG 9830-10060 GT GAG (GGC) AG 10826-10965 GT AGG -recovered snap_scaffold_156-snap.2-T1, initial, 9314, 9454 -recovered snap_scaffold_156-snap.2-T1, internal, 9314, 9454 -recovered snap_scaffold_156-snap.2-T1, internal, 9830, 10060 -recovered snap_scaffold_156-snap.2-T1, internal, 10826, 10965 Valid prediction for snap_scaffold_156-snap.3-T1 Couldn't classify 10707, 10965 Sorry, prediction GeneMark_model.106764_t fails validation. (ATG) AG 9314-9454 GT GGG (GGG) AG 9879-9984 GT CGG (ACA) AG 10009-10060 GT GAG (AGA) AG 10112-10138 GT CAG (AGA) AG 10194-10238 GT GAG (ACA) AG 10272-10280 GT GAG (AGG) AG 10306-10432 GT AGG (AGA) AG 10707-10965 GT AGG -recovered GeneMark_model.106764_t, initial, 9314, 9454 -recovered GeneMark_model.106764_t, internal, 9314, 9454 -recovered GeneMark_model.106764_t, internal, 9879, 9984 -recovered GeneMark_model.106764_t, internal, 10009, 10060 -recovered GeneMark_model.106764_t, internal, 10112, 10138 -recovered GeneMark_model.106764_t, internal, 10194, 10238 -recovered GeneMark_model.106764_t, internal, 10272, 10280 -recovered GeneMark_model.106764_t, internal, 10306, 10432 -recovered GeneMark_model.106764_t, internal, 10707, 10965 Valid prediction for GeneMark_model.106765_t Valid prediction for GlimmerHMM_glimmerT_61413-T1 Couldn't classify 1259, 1388 Sorry, prediction GeneMark_model.106769_t fails validation. (TCC) AG 1259-1388 GT GGG (AGA) AG 2044-2272 AG AGA -recovered GeneMark_model.106769_t, terminal, 2044, 2272 -recovered GeneMark_model.106769_t, internal, 1259, 1388 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8968, rend_intergenic: 1205 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 12169 -exon list size: 79 building trellis 1.2 2.5 3.7 4.9 6.2 7.4 8.6 9.9 11.1 12.3 13.6 14.8 16.0 17.3 18.5 19.8 21.0 22.2 23.5 24.7 25.9 27.2 28.4 29.6 30.9 32.1 33.3 34.6 35.8 37.0 38.3 39.5 40.7 42.0 43.2 44.4 45.7 46.9 48.1 49.4 50.6 51.9 53.1 54.3 55.6 56.8 58.0 59.3 60.5 61.7 63.0 64.2 65.4 66.7 67.9 69.1 70.4 71.6 72.8 74.1 75.3 76.5 77.8 79.0 80.2 81.5 82.7 84.0 85.2 86.4 87.7 88.9 90.1 91.4 92.6 93.8 95.1 96.3 97.5 98.8 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 8968, rend_intergenic: 1205 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support