-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1556

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 25, 128
Couldn't classify 1096, 1159
Sorry, prediction GeneMark_model.109473_t fails validation.
(GCA)	 AG	25-128	GT	GAG
(AGA)	 AG	848-853	GC	AAG
(AGA)	 AG	874-891	GC	AGG
(AAG)	 AG	914-925	GC	AGG
(AGA)	 AG	948-953	GC	AGG
(AGA)	 AG	978-1043	GC	AGG
(TGA)	 AG	1066-1074	GT	CAG
(AGA)	 AG	1096-1159	GT	ATG
-recovered GeneMark_model.109473_t, internal, 25, 128
-recovered GeneMark_model.109473_t, internal, 848, 853
-recovered GeneMark_model.109473_t, internal, 874, 891
-recovered GeneMark_model.109473_t, internal, 914, 925
-recovered GeneMark_model.109473_t, internal, 948, 953
-recovered GeneMark_model.109473_t, internal, 978, 1043
-recovered GeneMark_model.109473_t, internal, 1066, 1074
-recovered GeneMark_model.109473_t, internal, 1096, 1159

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2224
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support