-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 143
Couldn't classify 1033, 1121
Sorry, prediction snap_scaffold_1555-snap.2-T1 fails validation.
(TTG)	 AG	55-143	GT	AAG
(AAC)	 AG	454-472	GT	AGG
(TTG)	 AG	1033-1121	GT	AAG
-recovered snap_scaffold_1555-snap.2-T1, internal, 55, 143
-recovered snap_scaffold_1555-snap.2-T1, internal, 454, 472
-recovered snap_scaffold_1555-snap.2-T1, internal, 1033, 1121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 327, 440
Couldn't classify 2126, 2207
Sorry, prediction pasa_asmbl_15981.p1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	2126-2207	GT	AGG
-recovered pasa_asmbl_15981.p1, internal, 327, 440
-recovered pasa_asmbl_15981.p1, internal, 770, 915
-recovered pasa_asmbl_15981.p1, internal, 2126, 2207
Couldn't classify 2126, 2209
Sorry, prediction GeneMark_model.109472_t fails validation.
(ATG)	 GA	724-729	GT	CAG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1893	GT	AAG
(ACT)	 AG	2126-2209	GC	GTG
-recovered GeneMark_model.109472_t, initial, 724, 729
-recovered GeneMark_model.109472_t, internal, 770, 915
-recovered GeneMark_model.109472_t, internal, 1148, 1229
-recovered GeneMark_model.109472_t, internal, 1748, 1893
-recovered GeneMark_model.109472_t, internal, 2126, 2209
Couldn't classify 327, 440
Couldn't classify 2126, 2225
Sorry, prediction Augustus_model.g41732.t1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1893	GT	AAG
(ACT)	 AG	2126-2225		GC
-recovered Augustus_model.g41732.t1, internal, 327, 440
-recovered Augustus_model.g41732.t1, internal, 770, 915
-recovered Augustus_model.g41732.t1, internal, 1148, 1229
-recovered Augustus_model.g41732.t1, internal, 1748, 1893
Couldn't classify 327, 440
Couldn't classify 2126, 2207
Sorry, prediction snap_scaffold_1555-snap.1-T1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1893	GT	AAG
(ACT)	 AG	2126-2207	GT	AGG
-recovered snap_scaffold_1555-snap.1-T1, internal, 327, 440
-recovered snap_scaffold_1555-snap.1-T1, internal, 770, 915
-recovered snap_scaffold_1555-snap.1-T1, internal, 1148, 1229
-recovered snap_scaffold_1555-snap.1-T1, internal, 1748, 1893
-recovered snap_scaffold_1555-snap.1-T1, internal, 2126, 2207
Couldn't classify 327, 440
Sorry, prediction GlimmerHMM_glimmerT_62710-T1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1897	GC	AGG
-recovered GlimmerHMM_glimmerT_62710-T1, terminal, 1748, 1897
-recovered GlimmerHMM_glimmerT_62710-T1, internal, 327, 440
-recovered GlimmerHMM_glimmerT_62710-T1, internal, 770, 915
-recovered GlimmerHMM_glimmerT_62710-T1, internal, 1148, 1229
-recovered GlimmerHMM_glimmerT_62710-T1, internal, 1748, 1897

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1899, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2225
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1899, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support