-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1554

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41731.t1
add_exon() Sorry, Augustus_model.g41731.t1 495-642-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1536, 1725
Couldn't classify 1915, 2011
Sorry, prediction GeneMark_model.109471_t fails validation.
(GCC)	 AG	1536-1725	GT	GCG
(GGG)	 AG	1767-1823	GT	GAG
(GTG)	 AG	1856-1873	GT	GGG
(GCT)	 AG	1915-2011	GT	AGG
-recovered GeneMark_model.109471_t, internal, 1536, 1725
-recovered GeneMark_model.109471_t, internal, 1767, 1823
-recovered GeneMark_model.109471_t, internal, 1856, 1873
-recovered GeneMark_model.109471_t, internal, 1915, 2011

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2226
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support