-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1553

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 299, 364
Couldn't classify 1798, 1825
Sorry, prediction GeneMark_model.109470_t fails validation.
(GGG)	 AG	299-364	GT	TTG
(TAA)	 AG	481-531	GT	AGG
(AGA)	 AG	564-641	GT	CAG
(CAG)	 AG	676-765	GT	GGG
(GGA)	 AG	1142-1162	GT	GGG
(TGG)	 AG	1244-1267	GT	AGG
(CGG)	 AG	1304-1312	GT	GGG
(GTG)	 AG	1558-1638	GC	GAG
(AGA)	 AG	1660-1680	GT	GAG
(GGG)	 AG	1715-1738	GT	TGG
(GGG)	 AG	1798-1825	GT	AGG
-recovered GeneMark_model.109470_t, internal, 299, 364
-recovered GeneMark_model.109470_t, internal, 481, 531
-recovered GeneMark_model.109470_t, internal, 564, 641
-recovered GeneMark_model.109470_t, internal, 676, 765
-recovered GeneMark_model.109470_t, internal, 1142, 1162
-recovered GeneMark_model.109470_t, internal, 1244, 1267
-recovered GeneMark_model.109470_t, internal, 1304, 1312
-recovered GeneMark_model.109470_t, internal, 1558, 1638
-recovered GeneMark_model.109470_t, internal, 1660, 1680
-recovered GeneMark_model.109470_t, internal, 1715, 1738
-recovered GeneMark_model.109470_t, internal, 1798, 1825
Couldn't classify 1982, 2115
Sorry, prediction snap_scaffold_1553-snap.1-T1 fails validation.
(ATG)	 CC	1216-1267	GT	AGG
(CGC)	 AG	1982-2115	GT	TCG
-recovered snap_scaffold_1553-snap.1-T1, initial, 1216, 1267
-recovered snap_scaffold_1553-snap.1-T1, internal, 1982, 2115

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2227
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support