-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1551

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62709-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62709-T1 468-727-terminal-1 is invalid.
Valid prediction for Augustus_model.g41730.t1
Couldn't classify 1125, 1162
Couldn't classify 2073, 2102
Sorry, prediction GeneMark_model.109467_t fails validation.
(GGG)	 AG	1125-1162	GT	GGG
(AGA)	 AG	1307-1357	GT	GGG
(GCC)	 AG	1473-1583	GT	CGG
(AGA)	 AG	1762-1851	GT	GGG
(TGT)	 AG	2073-2102	GT	GGG
-recovered GeneMark_model.109467_t, internal, 1125, 1162
-recovered GeneMark_model.109467_t, internal, 1307, 1357
-recovered GeneMark_model.109467_t, internal, 1473, 1583
-recovered GeneMark_model.109467_t, internal, 1762, 1851
-recovered GeneMark_model.109467_t, internal, 2073, 2102
Valid prediction for snap_scaffold_1551-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2229
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support