-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_155

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106761_t
Valid prediction for GeneMark_model.106762_t
Valid prediction for snap_scaffold_155-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61412-T1
Valid prediction for GeneMark_model.106763_t
Valid prediction for snap_scaffold_155-snap.3-T1
Couldn't classify 89, 193
Sorry, prediction GeneMark_model.106759_t fails validation.
(CAG)	 AG	89-193	GC	GAG
(AGA)	 AG	219-251	GC	GAG
(AGC)	 AG	275-295	GC	GAG
(AGA)	 AG	319-400	AA	AGA
-recovered GeneMark_model.106759_t, terminal, 319, 400
-recovered GeneMark_model.106759_t, internal, 89, 193
-recovered GeneMark_model.106759_t, internal, 219, 251
-recovered GeneMark_model.106759_t, internal, 275, 295

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40844.t1
Couldn't classify 7478, 7590
Sorry, prediction snap_scaffold_155-snap.2-T1 fails validation.
(ATG)	 AT	2824-2844	GT	AGG
(CCA)	 AG	4921-5273	GT	AGG
(GAT)	 AG	6747-6835	GT	GGG
(GTC)	 AG	7288-7423	GT	CTG
(GAT)	 AG	7478-7590	GT	ACG
-recovered snap_scaffold_155-snap.2-T1, initial, 2824, 2844
-recovered snap_scaffold_155-snap.2-T1, internal, 4921, 5273
-recovered snap_scaffold_155-snap.2-T1, internal, 6747, 6835
-recovered snap_scaffold_155-snap.2-T1, internal, 7288, 7423
-recovered snap_scaffold_155-snap.2-T1, internal, 7478, 7590
Valid prediction for GeneMark_model.106760_t
Valid prediction for GlimmerHMM_glimmerT_61411-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5888, rend_intergenic: 4586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9352, rend_intergenic: 8902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12175
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5888, rend_intergenic: 4586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9352, rend_intergenic: 8902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support