-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1549

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1891, 2236
Sorry, prediction GlimmerHMM_glimmerT_62708-T1 fails validation.
(ATG)	 GC	470-486	GT	TTG
(CTT)	 AG	543-728	GT	TGG
(TGG)	 AG	852-963	GT	AGG
(GTG)	 AG	1256-1384	GT	AGG
(ATC)	 AG	1891-2236		GC
-recovered GlimmerHMM_glimmerT_62708-T1, initial, 470, 486
-recovered GlimmerHMM_glimmerT_62708-T1, internal, 543, 728
-recovered GlimmerHMM_glimmerT_62708-T1, internal, 852, 963
-recovered GlimmerHMM_glimmerT_62708-T1, internal, 1256, 1384
Couldn't classify 325, 461
Couldn't classify 1891, 2223
Sorry, prediction GeneMark_model.109466_t fails validation.
(GAC)	 AG	325-461	GT	GTG
(AGG)	 AG	588-728	GT	TGG
(TGG)	 AG	852-963	GT	AGG
(GTG)	 AG	1256-1384	GT	AGG
(ATC)	 AG	1891-2223	GT	AGG
-recovered GeneMark_model.109466_t, internal, 325, 461
-recovered GeneMark_model.109466_t, internal, 588, 728
-recovered GeneMark_model.109466_t, internal, 852, 963
-recovered GeneMark_model.109466_t, internal, 1256, 1384
-recovered GeneMark_model.109466_t, internal, 1891, 2223
Couldn't classify 325, 461
Couldn't classify 1891, 2236
Sorry, prediction Augustus_model.g41729.t1 fails validation.
(GAC)	 AG	325-461	GT	GTG
(CTT)	 AG	543-728	GT	TGG
(TGG)	 AG	852-963	GT	AGG
(GTG)	 AG	1256-1384	GT	AGG
(ATC)	 AG	1891-2236		GC
-recovered Augustus_model.g41729.t1, internal, 325, 461
-recovered Augustus_model.g41729.t1, internal, 543, 728
-recovered Augustus_model.g41729.t1, internal, 852, 963
-recovered Augustus_model.g41729.t1, internal, 1256, 1384
Couldn't classify 1256, 1384
Couldn't classify 1891, 2223
Sorry, prediction pasa_asmbl_15978.p1 fails validation.
(GTG)	 AG	1256-1384	GT	AGG
(ATC)	 AG	1891-2223	GT	AGG
-recovered pasa_asmbl_15978.p1, internal, 1256, 1384
-recovered pasa_asmbl_15978.p1, internal, 1891, 2223
Couldn't classify 344, 461
Couldn't classify 1891, 2223
Sorry, prediction snap_scaffold_1549-snap.1-T1 fails validation.
(TTC)	 AG	344-461	GT	GTG
(CTT)	 AG	543-728	GT	TGG
(TGG)	 AG	852-963	GT	AGG
(GTG)	 AG	1256-1651	GT	GTG
(ATC)	 AG	1891-2223	GT	AGG
-recovered snap_scaffold_1549-snap.1-T1, internal, 344, 461
-recovered snap_scaffold_1549-snap.1-T1, internal, 543, 728
-recovered snap_scaffold_1549-snap.1-T1, internal, 852, 963
-recovered snap_scaffold_1549-snap.1-T1, internal, 1256, 1651
-recovered snap_scaffold_1549-snap.1-T1, internal, 1891, 2223

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2236
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support