-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1548

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1332, 1615
Sorry, prediction GeneMark_model.109464_t fails validation.
(AGA)	 AG	1332-1615	GT	CTG
(ATC)	 AG	1696-1706	AA	GAA
-recovered GeneMark_model.109464_t, terminal, 1696, 1706
-recovered GeneMark_model.109464_t, internal, 1332, 1615

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 104, 194
Sorry, prediction GeneMark_model.109465_t fails validation.
(AGT)	 AG	104-194	GT	CAG
(GGA)	 AG	263-293	GT	GAG
-recovered GeneMark_model.109465_t, terminal, 263, 293
-recovered GeneMark_model.109465_t, internal, 104, 194
-recovered GeneMark_model.109465_t, internal, 263, 293
Couldn't classify 104, 194
Couldn't classify 531, 636
Sorry, prediction snap_scaffold_1548-snap.1-T1 fails validation.
(AGT)	 AG	104-194	GT	CAG
(TTT)	 AG	531-636	GT	AGG
-recovered snap_scaffold_1548-snap.1-T1, internal, 104, 194
-recovered snap_scaffold_1548-snap.1-T1, internal, 531, 636

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2238
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support