-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1546

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 594, 602
Couldn't classify 2004, 2086
Sorry, prediction GeneMark_model.109462_t fails validation.
(AAG)	 AG	594-602	GT	GCG
(ACA)	 AG	654-749	GT	ACG
(GTG)	 AG	1054-1065	GT	TGG
(TGT)	 AG	1177-1185	GT	GTG
(GGG)	 AG	1423-1581	GT	AGG
(CCC)	 AG	1695-1758	GT	CAG
(AGC)	 AG	2004-2086	GT	AAG
-recovered GeneMark_model.109462_t, internal, 594, 602
-recovered GeneMark_model.109462_t, internal, 654, 749
-recovered GeneMark_model.109462_t, internal, 1054, 1065
-recovered GeneMark_model.109462_t, internal, 1177, 1185
-recovered GeneMark_model.109462_t, internal, 1423, 1581
-recovered GeneMark_model.109462_t, internal, 1695, 1758
-recovered GeneMark_model.109462_t, internal, 2004, 2086
Couldn't classify 639, 749
Couldn't classify 1987, 2086
Sorry, prediction snap_scaffold_1546-snap.1-T1 fails validation.
(TCC)	 AG	639-749	GT	ACG
(GGG)	 AG	1369-1589	GT	GAG
(CCC)	 AG	1695-1777	GT	CGG
(GCC)	 AG	1987-2086	GT	AAG
-recovered snap_scaffold_1546-snap.1-T1, internal, 639, 749
-recovered snap_scaffold_1546-snap.1-T1, internal, 1369, 1589
-recovered snap_scaffold_1546-snap.1-T1, internal, 1695, 1777
-recovered snap_scaffold_1546-snap.1-T1, internal, 1987, 2086

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2239
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support