-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1545

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 211, 414
Couldn't classify 2189, 2242
Sorry, prediction Augustus_model.g41728.t1 fails validation.
(GCT)	 AG	211-414	GT	AGG
(AAA)	 AG	583-687	GT	TGG
(AAA)	 AG	885-992	GT	ATG
(TAC)	 AG	1072-1383	GT	ATG
(GCT)	 AG	1521-1724	GT	AGG
(AAA)	 AG	1887-1991	GT	TGG
(AAA)	 AG	2189-2242		CT
-recovered Augustus_model.g41728.t1, internal, 211, 414
-recovered Augustus_model.g41728.t1, internal, 583, 687
-recovered Augustus_model.g41728.t1, internal, 885, 992
-recovered Augustus_model.g41728.t1, internal, 1072, 1383
-recovered Augustus_model.g41728.t1, internal, 1521, 1724
-recovered Augustus_model.g41728.t1, internal, 1887, 1991
Couldn't classify 211, 414
Couldn't classify 1887, 1991
Sorry, prediction snap_scaffold_1545-snap.1-T1 fails validation.
(GCT)	 AG	211-414	GT	AGG
(AAA)	 AG	583-687	GT	TGG
(AAA)	 AG	885-992	GT	ATG
(TAC)	 AG	1072-1383	GT	ATG
(GCT)	 AG	1521-1724	GT	AGG
(AAA)	 AG	1887-1991	GT	TGG
-recovered snap_scaffold_1545-snap.1-T1, internal, 211, 414
-recovered snap_scaffold_1545-snap.1-T1, internal, 583, 687
-recovered snap_scaffold_1545-snap.1-T1, internal, 885, 992
-recovered snap_scaffold_1545-snap.1-T1, internal, 1072, 1383
-recovered snap_scaffold_1545-snap.1-T1, internal, 1521, 1724
-recovered snap_scaffold_1545-snap.1-T1, internal, 1887, 1991
Couldn't classify 211, 414
Couldn't classify 2189, 2239
Sorry, prediction pasa_asmbl_15977.p1 fails validation.
(GCT)	 AG	211-414	GT	AGG
(AAA)	 AG	583-687	GT	TGG
(AAA)	 AG	885-992	GT	ATG
(TAC)	 AG	1072-1383	GT	ATG
(GCT)	 AG	1521-1724	GT	AGG
(AAA)	 AG	1887-1991	GT	TGG
(AAA)	 AG	2189-2239	CC	TTC
-recovered pasa_asmbl_15977.p1, internal, 211, 414
-recovered pasa_asmbl_15977.p1, internal, 583, 687
-recovered pasa_asmbl_15977.p1, internal, 885, 992
-recovered pasa_asmbl_15977.p1, internal, 1072, 1383
-recovered pasa_asmbl_15977.p1, internal, 1521, 1724
-recovered pasa_asmbl_15977.p1, internal, 1887, 1991
Couldn't classify 211, 414
Couldn't classify 1887, 1991
Sorry, prediction GeneMark_model.109461_t fails validation.
(GCT)	 AG	211-414	GT	AGG
(AAA)	 AG	583-687	GT	TGG
(TAC)	 AG	1072-1383	GT	ATG
(GCT)	 AG	1521-1724	GT	AGG
(AAA)	 AG	1887-1991	GT	TGG
-recovered GeneMark_model.109461_t, internal, 211, 414
-recovered GeneMark_model.109461_t, internal, 583, 687
-recovered GeneMark_model.109461_t, internal, 1072, 1383
-recovered GeneMark_model.109461_t, internal, 1521, 1724
-recovered GeneMark_model.109461_t, internal, 1887, 1991
Couldn't classify 211, 414
Sorry, prediction GlimmerHMM_glimmerT_62707-T1 fails validation.
(GCT)	 AG	211-414	GT	AGG
(AAA)	 AG	583-687	GT	TGG
(AAA)	 AG	885-992	GT	ATG
(TAC)	 AG	1072-1383	GT	ATG
(GCT)	 AG	1521-1724	GT	AGG
(AAA)	 AG	1887-2057	AC	AGA
-recovered GlimmerHMM_glimmerT_62707-T1, terminal, 1887, 2057
-recovered GlimmerHMM_glimmerT_62707-T1, internal, 211, 414
-recovered GlimmerHMM_glimmerT_62707-T1, internal, 583, 687
-recovered GlimmerHMM_glimmerT_62707-T1, internal, 885, 992
-recovered GlimmerHMM_glimmerT_62707-T1, internal, 1072, 1383
-recovered GlimmerHMM_glimmerT_62707-T1, internal, 1521, 1724

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2242
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support