-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1544

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2173, 2224
Sorry, prediction GeneMark_model.109460_t fails validation.
(ATG)	 AC	1669-1688	GT	GCG
(AGA)	 AG	1752-1808	GT	AAG
(GGA)	 AG	1834-1845	GT	AGG
(AGG)	 AG	1884-1910	GT	GAG
(AGA)	 AG	1950-1961	GT	ATG
(GGA)	 AG	1992-2012	GT	ATG
(AGC)	 AG	2060-2074	GT	GAG
(AGA)	 AG	2122-2139	GT	GAG
(GGA)	 AG	2173-2224	GC	GAG
-recovered GeneMark_model.109460_t, initial, 1669, 1688
-recovered GeneMark_model.109460_t, internal, 1752, 1808
-recovered GeneMark_model.109460_t, internal, 1834, 1845
-recovered GeneMark_model.109460_t, internal, 1884, 1910
-recovered GeneMark_model.109460_t, internal, 1950, 1961
-recovered GeneMark_model.109460_t, internal, 1992, 2012
-recovered GeneMark_model.109460_t, internal, 2060, 2074
-recovered GeneMark_model.109460_t, internal, 2122, 2139
-recovered GeneMark_model.109460_t, internal, 2173, 2224

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62706-T1
Valid prediction for GeneMark_model.109459_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2245
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support