-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1542

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41727.t1
Valid prediction for GlimmerHMM_glimmerT_62705-T1
Couldn't classify 2038, 2068
Sorry, prediction GeneMark_model.109458_t fails validation.
(ATG)	 GG	144-257	GT	TGG
(GGG)	 AG	388-417	GT	AAG
(AAC)	 AG	1662-1800	GT	CAG
(TCC)	 AG	1826-1838	GT	ACG
(CGC)	 AG	1883-1957	GT	CAG
(ACC)	 AG	1982-2017	GT	GGG
(GTT)	 AG	2038-2068	GT	TGG
-recovered GeneMark_model.109458_t, initial, 144, 257
-recovered GeneMark_model.109458_t, internal, 388, 417
-recovered GeneMark_model.109458_t, internal, 1662, 1800
-recovered GeneMark_model.109458_t, internal, 1826, 1838
-recovered GeneMark_model.109458_t, internal, 1883, 1957
-recovered GeneMark_model.109458_t, internal, 1982, 2017
-recovered GeneMark_model.109458_t, internal, 2038, 2068
Couldn't classify 370, 417
Sorry, prediction snap_scaffold_1542-snap.1-T1 fails validation.
(CCC)	 AG	370-417	GT	AAG
(CAC)	 AG	714-812	GT	TGG
(GTG)	 AG	1226-1308	GT	AGG
(AAC)	 AG	1662-1849	GT	ACG
(AGC)	 AG	1881-1992	CT	GAC
-recovered snap_scaffold_1542-snap.1-T1, terminal, 1881, 1992
-recovered snap_scaffold_1542-snap.1-T1, internal, 370, 417
-recovered snap_scaffold_1542-snap.1-T1, internal, 714, 812
-recovered snap_scaffold_1542-snap.1-T1, internal, 1226, 1308
-recovered snap_scaffold_1542-snap.1-T1, internal, 1662, 1849

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2246
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support