-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1540

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 59
Sorry, prediction Augustus_model.g41726.t1 fails validation.
(AGG)	 CA	1-59	GA	AGG
Couldn't classify 9, 55
Couldn't classify 1547, 1604
Sorry, prediction GeneMark_model.109457_t fails validation.
(GAG)	 AG	9-55	GT	GAG
(AGA)	 AG	137-151	GT	AGG
(AAA)	 AG	184-243	GT	GAG
(AAG)	 AG	1441-1479	GT	AGG
(GGA)	 AG	1514-1519	GT	GGG
(GCA)	 AG	1547-1604	GT	GAG
-recovered GeneMark_model.109457_t, internal, 9, 55
-recovered GeneMark_model.109457_t, internal, 137, 151
-recovered GeneMark_model.109457_t, internal, 184, 243
-recovered GeneMark_model.109457_t, internal, 1441, 1479
-recovered GeneMark_model.109457_t, internal, 1514, 1519
-recovered GeneMark_model.109457_t, internal, 1547, 1604

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2251
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support