-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1537

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1834, 1889
Sorry, prediction GeneMark_model.109453_t fails validation.
(ATG)	 AA	1090-1181	GT	AGG
(GGC)	 AG	1384-1563	GT	AGG
(GGG)	 AG	1585-1599	GT	AGG
(TGA)	 AG	1633-1638	GT	GGG
(ACT)	 AG	1757-1811	GT	GTG
(AGC)	 AG	1834-1889	GT	CTG
-recovered GeneMark_model.109453_t, initial, 1090, 1181
-recovered GeneMark_model.109453_t, internal, 1384, 1563
-recovered GeneMark_model.109453_t, internal, 1585, 1599
-recovered GeneMark_model.109453_t, internal, 1633, 1638
-recovered GeneMark_model.109453_t, internal, 1757, 1811
-recovered GeneMark_model.109453_t, internal, 1834, 1889
Couldn't classify 288, 363
Couldn't classify 1834, 1945
Sorry, prediction snap_scaffold_1537-snap.2-T1 fails validation.
(GTC)	 AG	288-363	GT	GAG
(AGC)	 AG	1834-1945	GT	AGG
-recovered snap_scaffold_1537-snap.2-T1, internal, 288, 363
-recovered snap_scaffold_1537-snap.2-T1, internal, 1834, 1945

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 416, 549
Couldn't classify 1923, 2080
Sorry, prediction snap_scaffold_1537-snap.1-T1 fails validation.
(TCC)	 AG	416-549	GT	TGG
(CGC)	 AG	719-840	GT	CGG
(GAC)	 AG	1923-2080	GT	AAG
-recovered snap_scaffold_1537-snap.1-T1, internal, 416, 549
-recovered snap_scaffold_1537-snap.1-T1, internal, 719, 840
-recovered snap_scaffold_1537-snap.1-T1, internal, 1923, 2080
Valid prediction for GeneMark_model.109452_t
Couldn't classify 1411, 1540
Sorry, prediction GlimmerHMM_glimmerT_62702-T1 fails validation.
(GAG)	 AG	1411-1540	GT	ACG
(GAC)	 AG	1923-2084	GC	AGG
-recovered GlimmerHMM_glimmerT_62702-T1, terminal, 1923, 2084
-recovered GlimmerHMM_glimmerT_62702-T1, internal, 1411, 1540
-recovered GlimmerHMM_glimmerT_62702-T1, internal, 1923, 2084
Valid prediction for Augustus_model.g41724.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1839, rend_intergenic: 288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2254
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1839, rend_intergenic: 288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support