-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1536

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 883, 967
Sorry, prediction snap_scaffold_1536-snap.1-T1 fails validation.
(GTC)	 AG	883-967	GT	TGG
(CGG)	 AG	1560-1661	CT	GAC
-recovered snap_scaffold_1536-snap.1-T1, terminal, 1560, 1661
-recovered snap_scaffold_1536-snap.1-T1, internal, 883, 967
Couldn't classify 315, 371
Sorry, prediction GeneMark_model.109450_t fails validation.
(GAG)	 AG	315-371	GT	ATG
(AGG)	 AG	401-412	GT	GGG
(AGA)	 AG	438-575	GT	AGG
(GGA)	 AG	1103-1114	GT	AAG
(GGG)	 AG	1140-1229	GT	CGG
(AGA)	 AG	1314-1341	GC	GGG
(CGG)	 AG	1560-1661	CT	GAC
-recovered GeneMark_model.109450_t, terminal, 1560, 1661
-recovered GeneMark_model.109450_t, internal, 315, 371
-recovered GeneMark_model.109450_t, internal, 401, 412
-recovered GeneMark_model.109450_t, internal, 438, 575
-recovered GeneMark_model.109450_t, internal, 1103, 1114
-recovered GeneMark_model.109450_t, internal, 1140, 1229
-recovered GeneMark_model.109450_t, internal, 1314, 1341

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 134, 215
Sorry, prediction GeneMark_model.109451_t fails validation.
(AGA)	 AG	134-215	GT	GGG
(GAA)	 AG	237-242	GT	GGG
(GAG)	 AG	267-327	AG	AAA
-recovered GeneMark_model.109451_t, terminal, 267, 327
-recovered GeneMark_model.109451_t, internal, 134, 215
-recovered GeneMark_model.109451_t, internal, 237, 242
Couldn't classify 134, 201
Sorry, prediction GlimmerHMM_glimmerT_62701-T1 fails validation.
(AGA)	 AG	134-201	GT	GGG
(GAA)	 AG	631-729	AT	GAA
-recovered GlimmerHMM_glimmerT_62701-T1, terminal, 631, 729
-recovered GlimmerHMM_glimmerT_62701-T1, internal, 134, 201

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2258
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support