-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1535

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 221, 435
Sorry, prediction GlimmerHMM_glimmerT_62700-T1 fails validation.
(CTT)	 AG	221-435	GT	AGG
(ATC)	 AG	1060-1305	AG	GAA
-recovered GlimmerHMM_glimmerT_62700-T1, terminal, 1060, 1305
-recovered GlimmerHMM_glimmerT_62700-T1, internal, 221, 435
Couldn't classify 16, 115
Couldn't classify 1595, 1726
Sorry, prediction GeneMark_model.109449_t fails validation.
(GAA)	 AG	16-115	GT	AGG
(CTT)	 AG	221-435	GT	AGG
(ATC)	 AG	1060-1207	GT	TAG
(CTG)	 AG	1595-1726	GT	AGG
-recovered GeneMark_model.109449_t, internal, 16, 115
-recovered GeneMark_model.109449_t, internal, 221, 435
-recovered GeneMark_model.109449_t, internal, 1060, 1207
-recovered GeneMark_model.109449_t, internal, 1595, 1726
Couldn't classify 1, 115
Couldn't classify 1997, 2109
Sorry, prediction Augustus_model.g41723.t1 fails validation.
(CAC)	 GT	1-115	GT	AGG
(CTT)	 AG	221-435	GT	AGG
(ATC)	 AG	1060-1207	GT	TAG
(CTG)	 AG	1595-1726	GT	AGG
(GTT)	 AG	1997-2109	GT	AGG
-recovered Augustus_model.g41723.t1, internal, 221, 435
-recovered Augustus_model.g41723.t1, internal, 1060, 1207
-recovered Augustus_model.g41723.t1, internal, 1595, 1726
-recovered Augustus_model.g41723.t1, internal, 1997, 2109
Couldn't classify 221, 435
Couldn't classify 2162, 2256
Sorry, prediction snap_scaffold_1535-snap.1-T1 fails validation.
(CTT)	 AG	221-435	GT	AGG
(ATC)	 AG	1060-1207	GT	TAG
(CTG)	 AG	1595-1726	GT	AGG
(AGA)	 AG	2162-2256	GT	TAG
-recovered snap_scaffold_1535-snap.1-T1, internal, 221, 435
-recovered snap_scaffold_1535-snap.1-T1, internal, 1060, 1207
-recovered snap_scaffold_1535-snap.1-T1, internal, 1595, 1726
-recovered snap_scaffold_1535-snap.1-T1, internal, 2162, 2256

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2258
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support