-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1532

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41722.t1
add_exon() Sorry, Augustus_model.g41722.t1 244-455-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 58, 174
Couldn't classify 1530, 1923
Sorry, prediction snap_scaffold_1532-snap.1-T1 fails validation.
(TAG)	 AG	58-174	GT	AAG
(CAA)	 AG	1170-1291	GT	GGG
(GGT)	 AG	1530-1923	GT	ATG
-recovered snap_scaffold_1532-snap.1-T1, internal, 58, 174
-recovered snap_scaffold_1532-snap.1-T1, internal, 1170, 1291
-recovered snap_scaffold_1532-snap.1-T1, internal, 1530, 1923
Couldn't classify 73, 174
Sorry, prediction GeneMark_model.109446_t fails validation.
(GCC)	 AG	73-174	GT	AAG
(GCG)	 AG	1248-1291	GT	GGG
(GGA)	 AG	1349-1364	GT	GGG
(GGG)	 AG	1448-1459	GT	CAG
(CAC)	 AG	1487-1534	GT	GAG
(AGA)	 AG	1632-1649	GT	ACG
(ACG)	 AG	1672-1752	GT	ACG
(CGA)	 AG	1774-1806	GT	GGG
(GAT)	 AG	1828-1923	GT	ATG
(GAG)	 AG	1953-1983	CG	AGC
add_exon() Sorry, GeneMark_model.109446_t 1487-1534-terminal-1 is invalid.
-recovered GeneMark_model.109446_t, terminal, 1487, 1534
-recovered GeneMark_model.109446_t, terminal, 1953, 1983
-recovered GeneMark_model.109446_t, internal, 73, 174
-recovered GeneMark_model.109446_t, internal, 1248, 1291
-recovered GeneMark_model.109446_t, internal, 1349, 1364
-recovered GeneMark_model.109446_t, internal, 1448, 1459
-recovered GeneMark_model.109446_t, internal, 1487, 1534
-recovered GeneMark_model.109446_t, internal, 1632, 1649
-recovered GeneMark_model.109446_t, internal, 1672, 1752
-recovered GeneMark_model.109446_t, internal, 1774, 1806
-recovered GeneMark_model.109446_t, internal, 1828, 1923

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2264
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support