-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1531

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 50
Sorry, prediction GeneMark_model.109444_t fails validation.
(GGT)	 AG	39-50	GT	AGG
(AGA)	 AG	89-130	GT	AGG
(GAT)	 AG	213-224	GT	GTG
(GGG)	 AG	248-262	GT	GTG
(AGA)	 AG	408-413	GT	AGG
(AGA)	 AG	460-474	GT	GAG
(AGA)	 AG	510-518	GT	CAG
(TCT)	 AG	598-676	CT	AAC
-recovered GeneMark_model.109444_t, terminal, 39, 50
-recovered GeneMark_model.109444_t, terminal, 598, 676
-recovered GeneMark_model.109444_t, internal, 39, 50
-recovered GeneMark_model.109444_t, internal, 89, 130
-recovered GeneMark_model.109444_t, internal, 213, 224
-recovered GeneMark_model.109444_t, internal, 248, 262
-recovered GeneMark_model.109444_t, internal, 408, 413
-recovered GeneMark_model.109444_t, internal, 460, 474
-recovered GeneMark_model.109444_t, internal, 510, 518
Couldn't classify 2206, 2232
Sorry, prediction GeneMark_model.109445_t fails validation.
(ATG)	 AC	1196-1288	GT	TGG
(AGA)	 AG	1325-1335	GT	GAG
(ATG)	 AG	1435-1503	GT	GAG
(AGA)	 AG	1538-1612	GT	AGG
(GGC)	 AG	1636-1740	GT	AGG
(GAG)	 AG	1765-1899	GT	ATG
(GGA)	 AG	2206-2232	GT	GAG
-recovered GeneMark_model.109445_t, initial, 1196, 1288
-recovered GeneMark_model.109445_t, initial, 1435, 1503
-recovered GeneMark_model.109445_t, internal, 1325, 1335
-recovered GeneMark_model.109445_t, internal, 1435, 1503
-recovered GeneMark_model.109445_t, internal, 1538, 1612
-recovered GeneMark_model.109445_t, internal, 1636, 1740
-recovered GeneMark_model.109445_t, internal, 1765, 1899
-recovered GeneMark_model.109445_t, internal, 2206, 2232

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 84, 186
Couldn't classify 806, 875
Sorry, prediction snap_scaffold_1531-snap.1-T1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-875	GT	TAG
-recovered snap_scaffold_1531-snap.1-T1, internal, 84, 186
-recovered snap_scaffold_1531-snap.1-T1, internal, 279, 429
-recovered snap_scaffold_1531-snap.1-T1, internal, 806, 875
Couldn't classify 84, 186
Sorry, prediction GlimmerHMM_glimmerT_62698-T1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-876	TA	AGT
-recovered GlimmerHMM_glimmerT_62698-T1, terminal, 806, 876
-recovered GlimmerHMM_glimmerT_62698-T1, internal, 84, 186
-recovered GlimmerHMM_glimmerT_62698-T1, internal, 279, 429
Couldn't classify 84, 186
Sorry, prediction Augustus_model.g41721.t1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-876	TA	AGT
-recovered Augustus_model.g41721.t1, terminal, 806, 876
-recovered Augustus_model.g41721.t1, internal, 84, 186
-recovered Augustus_model.g41721.t1, internal, 279, 429

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2264
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support