-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1530

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 74
Sorry, prediction GeneMark_model.109443_t fails validation.
(AGA)	 AG	60-74	GT	GAG
(CGG)	 AG	1292-1781	GC	GAG
-recovered GeneMark_model.109443_t, terminal, 1292, 1781
-recovered GeneMark_model.109443_t, internal, 60, 74
-recovered GeneMark_model.109443_t, internal, 1292, 1781
Couldn't classify 1272, 1781
Sorry, prediction pasa_asmbl_15973.p1 fails validation.
(CTT)	 NN	1272-1781	GC	GAG
Valid prediction for GlimmerHMM_glimmerT_62697-T1
Valid prediction for Augustus_model.g41720.t1
Valid prediction for snap_scaffold_1530-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2265
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support