-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_153

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61406-T1
Valid prediction for Augustus_model.g40841.t1
Valid prediction for snap_scaffold_153-snap.5-T1
Couldn't classify 12194, 12237
Sorry, prediction GeneMark_model.106751_t fails validation.
(ATG)	 GG	9145-9263	GT	GAG
(GAA)	 AG	9295-9654	GT	CTG
(AGA)	 AG	12152-12166	GT	GAG
(ACG)	 AG	12194-12237	GT	AGG
-recovered GeneMark_model.106751_t, initial, 9145, 9263
-recovered GeneMark_model.106751_t, internal, 9295, 9654
-recovered GeneMark_model.106751_t, internal, 12152, 12166
-recovered GeneMark_model.106751_t, internal, 12194, 12237
Valid prediction for GlimmerHMM_glimmerT_61408-T1
Valid prediction for Augustus_model.g40840.t1
Valid prediction for GlimmerHMM_glimmerT_61407-T1
Valid prediction for GeneMark_model.106750_t
Valid prediction for snap_scaffold_153-snap.4-T1
Couldn't classify 2004, 4378
Sorry, prediction snap_scaffold_153-snap.2-T1 fails validation.
(GCC)	 AG	2004-4378	GT	CAG
(GCT)	 AG	5019-5025	GT	AGG
(GTG)	 AG	5780-5881	GT	ATG
(GCT)	 AG	6365-6468	CA	GAC
-recovered snap_scaffold_153-snap.2-T1, terminal, 5019, 5025
-recovered snap_scaffold_153-snap.2-T1, terminal, 6365, 6468
-recovered snap_scaffold_153-snap.2-T1, internal, 2004, 4378
-recovered snap_scaffold_153-snap.2-T1, internal, 5019, 5025
-recovered snap_scaffold_153-snap.2-T1, internal, 5780, 5881
Valid prediction for snap_scaffold_153-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 12231, 12281
Sorry, prediction snap_scaffold_153-snap.1-T1 fails validation.
(ATG)	 GC	2174-2197	GT	TGG
(TTC)	 AG	4904-4962	GT	ATG
(TGT)	 AG	5943-6078	GT	TTG
(GAA)	 AG	6140-6241	GT	AAG
(GCT)	 AG	6550-6768	GT	GGG
(GGA)	 AG	7181-7372	GT	TAG
(CCG)	 AG	12231-12281	GT	AGG
-recovered snap_scaffold_153-snap.1-T1, initial, 2174, 2197
-recovered snap_scaffold_153-snap.1-T1, internal, 4904, 4962
-recovered snap_scaffold_153-snap.1-T1, internal, 5943, 6078
-recovered snap_scaffold_153-snap.1-T1, internal, 6140, 6241
-recovered snap_scaffold_153-snap.1-T1, internal, 6550, 6768
-recovered snap_scaffold_153-snap.1-T1, internal, 7181, 7372
-recovered snap_scaffold_153-snap.1-T1, internal, 12231, 12281
Valid prediction for GeneMark_model.106749_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10239, rend_intergenic: 2004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12412
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 10239, rend_intergenic: 2004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support