-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1529

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109441_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 23, 40
Sorry, prediction GeneMark_model.109442_t fails validation.
(TGA)	 AG	23-40	GT	GAG
(GGG)	 AG	65-73	GT	AGG
(TGA)	 AG	100-120	GT	AGG
(GGG)	 AG	170-185	GT	AAG
(GAG)	 AG	393-554	GT	CTG
(GTT)	 AG	1279-1329	CA	AGC
-recovered GeneMark_model.109442_t, terminal, 1279, 1329
-recovered GeneMark_model.109442_t, internal, 23, 40
-recovered GeneMark_model.109442_t, internal, 65, 73
-recovered GeneMark_model.109442_t, internal, 100, 120
-recovered GeneMark_model.109442_t, internal, 170, 185
-recovered GeneMark_model.109442_t, internal, 393, 554
Valid prediction for pasa_asmbl_15972.p1
Valid prediction for CodingQuarry_transcript_18254-T1
Couldn't classify 393, 522
Couldn't classify 1759, 1821
Sorry, prediction Augustus_model.g41719.t1 fails validation.
(GAG)	 AG	393-522	GT	GGG
(GTT)	 AG	1279-1364	GT	AGG
(GTC)	 AG	1759-1821	GT	TGG
-recovered Augustus_model.g41719.t1, internal, 393, 522
-recovered Augustus_model.g41719.t1, internal, 1279, 1364
-recovered Augustus_model.g41719.t1, internal, 1759, 1821
Couldn't classify 393, 554
Sorry, prediction GlimmerHMM_glimmerT_62696-T1 fails validation.
(GAG)	 AG	393-554	GT	CTG
(GTT)	 AG	1279-1329	CA	AGC
-recovered GlimmerHMM_glimmerT_62696-T1, terminal, 1279, 1329
-recovered GlimmerHMM_glimmerT_62696-T1, internal, 393, 554
Couldn't classify 393, 522
Couldn't classify 2113, 2235
Sorry, prediction snap_scaffold_1529-snap.1-T1 fails validation.
(GAG)	 AG	393-522	GT	GGG
(GTT)	 AG	1279-1364	GT	AGG
(GCG)	 AG	2113-2235	GT	AGG
-recovered snap_scaffold_1529-snap.1-T1, internal, 393, 522
-recovered snap_scaffold_1529-snap.1-T1, internal, 1279, 1364
-recovered snap_scaffold_1529-snap.1-T1, internal, 2113, 2235

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2266
-exon list size: 23


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support