-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1527

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109438_t
add_exon() Sorry, GeneMark_model.109438_t 399-416-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.109438_t 1296-1331-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.109438_t 1489-1549-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 437
Sorry, prediction GeneMark_model.109439_t fails validation.
(AGA)	 AG	33-437	GT	GAG
(AGA)	 AG	552-578	GT	GGG
(AGA)	 AG	602-610	GT	GGG
(ACA)	 AG	636-642	TG	AAT
-recovered GeneMark_model.109439_t, terminal, 33, 437
-recovered GeneMark_model.109439_t, terminal, 636, 642
-recovered GeneMark_model.109439_t, internal, 33, 437
-recovered GeneMark_model.109439_t, internal, 552, 578
-recovered GeneMark_model.109439_t, internal, 602, 610

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2269
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support