-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1525

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1525-snap.1-T1
Couldn't classify 300, 332
Couldn't classify 2097, 2124
Sorry, prediction GeneMark_model.109436_t fails validation.
(GGG)	 AG	300-332	GT	AGG
(GAT)	 AG	369-735	GT	GGG
(ACT)	 AG	1011-1033	GT	CTG
(GGG)	 AG	1133-1192	GT	GAG
(AGG)	 AG	1216-1350	GT	CGG
(AAG)	 AG	1382-1525	GT	ATG
(AAC)	 AG	1591-1809	GT	GGG
(GCT)	 AG	1953-2040	GT	AGG
(GAA)	 AG	2097-2124	GT	AGG
-recovered GeneMark_model.109436_t, internal, 300, 332
-recovered GeneMark_model.109436_t, internal, 369, 735
-recovered GeneMark_model.109436_t, internal, 1011, 1033
-recovered GeneMark_model.109436_t, internal, 1133, 1192
-recovered GeneMark_model.109436_t, internal, 1216, 1350
-recovered GeneMark_model.109436_t, internal, 1382, 1525
-recovered GeneMark_model.109436_t, internal, 1591, 1809
-recovered GeneMark_model.109436_t, internal, 1953, 2040
-recovered GeneMark_model.109436_t, internal, 2097, 2124

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2269
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support