-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1524

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1704, 1943
Sorry, prediction snap_scaffold_1524-snap.1-T1 fails validation.
(ATG)	 GC	504-523	GT	AGG
(AGC)	 AG	668-788	GT	GGG
(CAT)	 AG	1704-1943	GT	AGG
-recovered snap_scaffold_1524-snap.1-T1, initial, 504, 523
-recovered snap_scaffold_1524-snap.1-T1, internal, 668, 788
-recovered snap_scaffold_1524-snap.1-T1, internal, 1704, 1943
Valid prediction for GeneMark_model.109435_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1524-snap.2-T1
Couldn't classify 1517, 1640
Sorry, prediction GeneMark_model.109434_t fails validation.
(ATG)	 TG	716-852	GT	AAG
(AGA)	 AG	1007-1012	GT	AGG
(ACA)	 AG	1033-1107	GT	GAG
(GGC)	 AG	1517-1640	GT	AGG
-recovered GeneMark_model.109434_t, initial, 716, 852
-recovered GeneMark_model.109434_t, internal, 1007, 1012
-recovered GeneMark_model.109434_t, internal, 1033, 1107
-recovered GeneMark_model.109434_t, internal, 1517, 1640
Couldn't classify 1517, 1640
Sorry, prediction Augustus_model.g41717.t1 fails validation.
(ATG)	 AG	857-885	GT	AGG
(GGC)	 AG	1517-1640	GT	AGG
-recovered Augustus_model.g41717.t1, initial, 857, 885
-recovered Augustus_model.g41717.t1, internal, 857, 885
-recovered Augustus_model.g41717.t1, internal, 1517, 1640

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1943, rend_intergenic: 614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2271
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1943, rend_intergenic: 614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support