-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2205, 2237
Sorry, prediction GeneMark_model.109432_t fails validation.
(ATG)	 AC	1375-1430	GT	AAG
(AAA)	 AG	1776-1916	GT	AAG
(CGA)	 AG	1940-1978	GT	GAG
(GGA)	 AG	2145-2177	GT	GGG
(GGA)	 AG	2205-2237	GT	GGG
-recovered GeneMark_model.109432_t, initial, 1375, 1430
-recovered GeneMark_model.109432_t, internal, 1776, 1916
-recovered GeneMark_model.109432_t, internal, 1940, 1978
-recovered GeneMark_model.109432_t, internal, 2145, 2177
-recovered GeneMark_model.109432_t, internal, 2205, 2237
Couldn't classify 317, 359
Couldn't classify 1738, 1916
Sorry, prediction snap_scaffold_1522-snap.1-T1 fails validation.
(CTC)	 AG	317-359	GT	AGG
(GTG)	 AG	1738-1916	GT	AAG
-recovered snap_scaffold_1522-snap.1-T1, internal, 317, 359
-recovered snap_scaffold_1522-snap.1-T1, internal, 1738, 1916

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62693-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62693-T1 810-969-terminal-1 is invalid.
Couldn't classify 810, 961
Sorry, prediction Augustus_model.g41715.t1 fails validation.
(GAT)	 AG	810-961	GT	CGG
-recovered Augustus_model.g41715.t1, internal, 810, 961
Valid prediction for GeneMark_model.109431_t
Couldn't classify 1304, 1488
Sorry, prediction snap_scaffold_1522-snap.2-T1 fails validation.
(ATG)	 GG	1145-1237	GT	GGG
(GGT)	 AG	1304-1488	GT	GGG
-recovered snap_scaffold_1522-snap.2-T1, initial, 1145, 1237
-recovered snap_scaffold_1522-snap.2-T1, internal, 1304, 1488

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1916, rend_intergenic: 786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2273
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1916, rend_intergenic: 786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support