-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1521

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 22, 102
Sorry, prediction GeneMark_model.109429_t fails validation.
(GTT)	 AG	22-102	GT	GCG
(GAT)	 AG	133-311	GT	GTG
(GCG)	 AG	659-936	CC	AGC
-recovered GeneMark_model.109429_t, terminal, 659, 936
-recovered GeneMark_model.109429_t, internal, 22, 102
-recovered GeneMark_model.109429_t, internal, 133, 311
Couldn't classify 133, 311
Sorry, prediction snap_scaffold_1521-snap.1-T1 fails validation.
(GAT)	 AG	133-311	GT	GTG
(GCG)	 AG	659-936	CC	AGC
-recovered snap_scaffold_1521-snap.1-T1, terminal, 659, 936
-recovered snap_scaffold_1521-snap.1-T1, internal, 133, 311
Couldn't classify 2174, 2253
Sorry, prediction snap_scaffold_1521-snap.2-T1 fails validation.
(ATG)	 AA	1911-2120	GT	AGG
(GGG)	 AG	2174-2253	GT	AAG
-recovered snap_scaffold_1521-snap.2-T1, initial, 1911, 2120
-recovered snap_scaffold_1521-snap.2-T1, internal, 2174, 2253
Couldn't classify 133, 311
Sorry, prediction Augustus_model.g41714.t1 fails validation.
(GAT)	 AG	133-311	GT	GTG
(GCG)	 AG	659-936	CC	AGC
-recovered Augustus_model.g41714.t1, terminal, 659, 936
-recovered Augustus_model.g41714.t1, internal, 133, 311
Valid prediction for GlimmerHMM_glimmerT_62691-T1
Valid prediction for GlimmerHMM_glimmerT_62692-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 148
Sorry, prediction GeneMark_model.109430_t fails validation.
(AGT)	 AG	39-148	GT	AGG
(GCG)	 AG	185-315	GA	GAG
-recovered GeneMark_model.109430_t, terminal, 185, 315
-recovered GeneMark_model.109430_t, internal, 39, 148

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2278
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support