-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40837.t1
Valid prediction for Augustus_model.g40839.t1
Valid prediction for snap_scaffold_152-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61405-T1
Valid prediction for GlimmerHMM_glimmerT_61403-T1
Couldn't classify 115, 259
Sorry, prediction snap_scaffold_152-snap.1-T1 fails validation.
(GTC)	 AG	115-259	GT	CAG
(CCG)	 AG	1220-1417	GT	TCG
(GTT)	 AG	6985-7124	GT	TGG
(CTG)	 AG	7791-7849	GT	CGG
(GGG)	 AG	7874-8034	GT	GAG
(TGC)	 AG	8139-8332	GT	AGG
(CGG)	 AG	8427-8531	TT	GAT
-recovered snap_scaffold_152-snap.1-T1, terminal, 8427, 8531
-recovered snap_scaffold_152-snap.1-T1, internal, 115, 259
-recovered snap_scaffold_152-snap.1-T1, internal, 1220, 1417
-recovered snap_scaffold_152-snap.1-T1, internal, 6985, 7124
-recovered snap_scaffold_152-snap.1-T1, internal, 7791, 7849
-recovered snap_scaffold_152-snap.1-T1, internal, 7874, 8034
-recovered snap_scaffold_152-snap.1-T1, internal, 8139, 8332
Valid prediction for Augustus_model.g40838.t1
Valid prediction for GeneMark_model.106745_t
Valid prediction for GlimmerHMM_glimmerT_61404-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_152-snap.2-T1
Couldn't classify 20, 40
Sorry, prediction GeneMark_model.106747_t fails validation.
(GTG)	 AG	20-40	GT	CGG
(GGC)	 AG	128-208	GT	AGG
(CGT)	 AG	289-383	GT	CGG
(TGG)	 AG	437-513	GA	AGG
-recovered GeneMark_model.106747_t, terminal, 437, 513
-recovered GeneMark_model.106747_t, internal, 20, 40
-recovered GeneMark_model.106747_t, internal, 128, 208
-recovered GeneMark_model.106747_t, internal, 289, 383
Valid prediction for GeneMark_model.106746_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8531, rend_intergenic: 8117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10852, rend_intergenic: 8562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12425
-exon list size: 74


building trellis

1.3    
2.6    
3.9    
5.3    
6.6    
7.9    
9.2    
10.5    
11.8    
13.2    
14.5    
15.8    
17.1    
18.4    
19.7    
21.1    
22.4    
23.7    
25.0    
26.3    
27.6    
28.9    
30.3    
31.6    
32.9    
34.2    
35.5    
36.8    
38.2    
39.5    
40.8    
42.1    
43.4    
44.7    
46.1    
47.4    
48.7    
50.0    
51.3    
52.6    
53.9    
55.3    
56.6    
57.9    
59.2    
60.5    
61.8    
63.2    
64.5    
65.8    
67.1    
68.4    
69.7    
71.1    
72.4    
73.7    
75.0    
76.3    
77.6    
78.9    
80.3    
81.6    
82.9    
84.2    
85.5    
86.8    
88.2    
89.5    
90.8    
92.1    
93.4    
94.7    
96.1    
97.4    
98.7    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 8531, rend_intergenic: 8117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10852, rend_intergenic: 8562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support