-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 254, 336
Sorry, prediction GeneMark_model.109423_t fails validation.
(TTC)	 AG	254-336	GT	AGG
(AGA)	 AG	714-764	GT	GAG
(ATT)	 AG	807-821	GT	CCG
(TCA)	 AG	851-943	GT	AGG
(AGA)	 AG	1056-1115	GT	AGG
(ACA)	 AG	1166-1225	GT	GAG
(AGG)	 AG	1247-1256	AC	GAA
-recovered GeneMark_model.109423_t, terminal, 1247, 1256
-recovered GeneMark_model.109423_t, internal, 254, 336
-recovered GeneMark_model.109423_t, internal, 714, 764
-recovered GeneMark_model.109423_t, internal, 807, 821
-recovered GeneMark_model.109423_t, internal, 851, 943
-recovered GeneMark_model.109423_t, internal, 1056, 1115
-recovered GeneMark_model.109423_t, internal, 1166, 1225

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 327, 509
Sorry, prediction GeneMark_model.109424_t fails validation.
(TCT)	 AG	327-509	GT	TGG
(CAA)	 AG	714-923	AC	GAA
-recovered GeneMark_model.109424_t, terminal, 714, 923
-recovered GeneMark_model.109424_t, internal, 327, 509
Couldn't classify 357, 470
Couldn't classify 714, 899
Sorry, prediction pasa_asmbl_15970.p1 fails validation.
(CAG)	 TG	357-470	GT	AGG
(CAA)	 AG	714-899	CG	CCC
Couldn't classify 327, 509
Couldn't classify 1961, 2066
Sorry, prediction snap_scaffold_1518-snap.1-T1 fails validation.
(TCT)	 AG	327-509	GT	TGG
(CAA)	 AG	714-902	GT	GAG
(AGC)	 AG	1246-1404	GT	ACG
(GAA)	 AG	1961-2066	GT	GAG
-recovered snap_scaffold_1518-snap.1-T1, internal, 327, 509
-recovered snap_scaffold_1518-snap.1-T1, internal, 714, 902
-recovered snap_scaffold_1518-snap.1-T1, internal, 1246, 1404
-recovered snap_scaffold_1518-snap.1-T1, internal, 1961, 2066
Couldn't classify 327, 470
Couldn't classify 1961, 2066
Sorry, prediction Augustus_model.g41712.t1 fails validation.
(TCT)	 AG	327-470	GT	AGG
(CAA)	 AG	714-902	GT	GAG
(GAA)	 AG	1961-2066	GT	GAG
-recovered Augustus_model.g41712.t1, internal, 327, 470
-recovered Augustus_model.g41712.t1, internal, 714, 902
-recovered Augustus_model.g41712.t1, internal, 1961, 2066
Couldn't classify 327, 470
Sorry, prediction GlimmerHMM_glimmerT_62688-T1 fails validation.
(TCT)	 AG	327-470	GT	AGG
(CAA)	 AG	714-902	GT	GAG
(GAA)	 AG	1961-2122	CA	AAC
-recovered GlimmerHMM_glimmerT_62688-T1, terminal, 1961, 2122
-recovered GlimmerHMM_glimmerT_62688-T1, internal, 327, 470
-recovered GlimmerHMM_glimmerT_62688-T1, internal, 714, 902

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2282
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support