-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1517

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109421_t
add_exon() Sorry, GeneMark_model.109421_t 34-238-terminal-1 is invalid.
Couldn't classify 1999, 2199
Sorry, prediction snap_scaffold_1517-snap.1-T1 fails validation.
(ATG)	 AC	251-257	GT	ATG
(GTC)	 AG	441-477	GT	AGG
(GTC)	 AG	1999-2199	GT	AGG
-recovered snap_scaffold_1517-snap.1-T1, initial, 251, 257
-recovered snap_scaffold_1517-snap.1-T1, internal, 441, 477
-recovered snap_scaffold_1517-snap.1-T1, internal, 1999, 2199

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 123, 326
Sorry, prediction GlimmerHMM_glimmerT_62687-T1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1902	AT	AAA
-recovered GlimmerHMM_glimmerT_62687-T1, terminal, 1785, 1902
-recovered GlimmerHMM_glimmerT_62687-T1, internal, 123, 326
-recovered GlimmerHMM_glimmerT_62687-T1, internal, 645, 793
Couldn't classify 123, 326
Sorry, prediction Augustus_model.g41711.t1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1902	AT	AAA
-recovered Augustus_model.g41711.t1, terminal, 1785, 1902
-recovered Augustus_model.g41711.t1, internal, 123, 326
-recovered Augustus_model.g41711.t1, internal, 645, 793
Couldn't classify 123, 326
Couldn't classify 1785, 1898
Sorry, prediction snap_scaffold_1517-snap.2-T1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1898	GT	TGG
-recovered snap_scaffold_1517-snap.2-T1, internal, 123, 326
-recovered snap_scaffold_1517-snap.2-T1, internal, 645, 793
-recovered snap_scaffold_1517-snap.2-T1, internal, 1785, 1898
Couldn't classify 123, 326
Sorry, prediction GeneMark_model.109422_t fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(ATC)	 AG	1571-1597	GT	GGG
(GCT)	 AG	1785-1902	AT	AAA
-recovered GeneMark_model.109422_t, terminal, 1785, 1902
-recovered GeneMark_model.109422_t, internal, 123, 326
-recovered GeneMark_model.109422_t, internal, 645, 793
-recovered GeneMark_model.109422_t, internal, 1571, 1597
Couldn't classify 111, 326
Couldn't classify 1785, 1899
Sorry, prediction pasa_asmbl_15968.p1 fails validation.
(TCC)	 CC	111-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1899	TA	GGT
-recovered pasa_asmbl_15968.p1, internal, 645, 793

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2199, rend_intergenic: 388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2285
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2199, rend_intergenic: 388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support