-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41709.t1
add_exon() Sorry, Augustus_model.g41709.t1 198-435-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 829, 903
Sorry, prediction Augustus_model.g41710.t1 fails validation.
(AGA)	 AG	829-903	GT	AGG
(CAT)	 AG	1346-1452	GT	AGG
(CAC)	 AG	1538-1597	AT	AGA
-recovered Augustus_model.g41710.t1, terminal, 1538, 1597
-recovered Augustus_model.g41710.t1, internal, 829, 903
-recovered Augustus_model.g41710.t1, internal, 1346, 1452
Couldn't classify 829, 903
Sorry, prediction GlimmerHMM_glimmerT_62686-T1 fails validation.
(AGA)	 AG	829-903	GT	AGG
(GTC)	 AG	1856-1980	AC	GAA
-recovered GlimmerHMM_glimmerT_62686-T1, terminal, 1856, 1980
-recovered GlimmerHMM_glimmerT_62686-T1, internal, 829, 903
Couldn't classify 1934, 2042
Sorry, prediction snap_scaffold_1514-snap.1-T1 fails validation.
(ATG)	 GG	192-222	GT	GAG
(AGA)	 AG	829-884	GT	AAG
(GTC)	 AG	1011-1177	GT	GGG
(ACG)	 AG	1934-2042	GT	GGG
-recovered snap_scaffold_1514-snap.1-T1, initial, 192, 222
-recovered snap_scaffold_1514-snap.1-T1, internal, 829, 884
-recovered snap_scaffold_1514-snap.1-T1, internal, 1011, 1177
-recovered snap_scaffold_1514-snap.1-T1, internal, 1934, 2042
Couldn't classify 163, 222
Sorry, prediction GeneMark_model.109418_t fails validation.
(GAG)	 AG	163-222	GT	GAG
(GGA)	 AG	254-332	GC	GAG
add_exon() Sorry, GeneMark_model.109418_t 163-222-terminal-1 is invalid.
-recovered GeneMark_model.109418_t, terminal, 163, 222
-recovered GeneMark_model.109418_t, terminal, 254, 332
-recovered GeneMark_model.109418_t, internal, 163, 222
-recovered GeneMark_model.109418_t, internal, 254, 332

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2292
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support