-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1513

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109417_t
add_exon() Sorry, GeneMark_model.109417_t 2002-2233-terminal-1 is invalid.
Valid prediction for snap_scaffold_1513-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 559, 663
Sorry, prediction GlimmerHMM_glimmerT_62685-T1 fails validation.
(GAT)	 AG	559-663	GT	CAG
(GAT)	 AG	686-931	CC	AAC
-recovered GlimmerHMM_glimmerT_62685-T1, terminal, 686, 931
-recovered GlimmerHMM_glimmerT_62685-T1, internal, 559, 663

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2292
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support