-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 73
Sorry, prediction GeneMark_model.109415_t fails validation.
(GAG)	 AG	35-73	GT	GAG
(AGA)	 AG	125-139	GT	GTG
(AGC)	 AG	165-173	GT	AAG
(AGA)	 AG	201-235	GC	GAG
(AAA)	 AG	257-269	GC	GAG
(AGA)	 AG	293-301	GC	GAG
(AAA)	 AG	329-341	GT	GAG
(AAG)	 AG	394-480	CA	GAC
-recovered GeneMark_model.109415_t, terminal, 394, 480
-recovered GeneMark_model.109415_t, internal, 35, 73
-recovered GeneMark_model.109415_t, internal, 125, 139
-recovered GeneMark_model.109415_t, internal, 165, 173
-recovered GeneMark_model.109415_t, internal, 201, 235
-recovered GeneMark_model.109415_t, internal, 257, 269
-recovered GeneMark_model.109415_t, internal, 293, 301
-recovered GeneMark_model.109415_t, internal, 329, 341

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 678, 768
Couldn't classify 1823, 1925
Sorry, prediction snap_scaffold_1511-snap.1-T1 fails validation.
(AGG)	 AG	678-768	GT	AGG
(GTT)	 AG	1823-1925	GT	AGG
-recovered snap_scaffold_1511-snap.1-T1, internal, 678, 768
-recovered snap_scaffold_1511-snap.1-T1, internal, 1823, 1925
Couldn't classify 341, 386
Sorry, prediction GlimmerHMM_glimmerT_62683-T1 fails validation.
(GTG)	 AG	341-386	GT	AGG
(AGG)	 AG	678-772	GA	AGG
-recovered GlimmerHMM_glimmerT_62683-T1, terminal, 678, 772
-recovered GlimmerHMM_glimmerT_62683-T1, internal, 341, 386
Couldn't classify 341, 386
Sorry, prediction Augustus_model.g41707.t1 fails validation.
(GTG)	 AG	341-386	GT	AGG
(AGG)	 AG	678-768	GT	AGG
(CCC)	 AG	1380-1419	TT	GAT
-recovered Augustus_model.g41707.t1, terminal, 1380, 1419
-recovered Augustus_model.g41707.t1, internal, 341, 386
-recovered Augustus_model.g41707.t1, internal, 678, 768
Couldn't classify 1821, 1925
Sorry, prediction Augustus_model.g41706.t1 fails validation.
(ATG)	 TA	1457-1468	GT	TGG
(AGG)	 AG	1821-1925	GT	AGG
-recovered Augustus_model.g41706.t1, initial, 1457, 1468
-recovered Augustus_model.g41706.t1, internal, 1821, 1925

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2296
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support