-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1509

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1301, 1709
Sorry, prediction snap_scaffold_1509-snap.1-T1 fails validation.
(ATG)	 GA	1117-1122	GT	CTG
(AGG)	 AG	1301-1709	GT	AGG
-recovered snap_scaffold_1509-snap.1-T1, initial, 1117, 1122
-recovered snap_scaffold_1509-snap.1-T1, internal, 1301, 1709
Couldn't classify 1397, 1507
Couldn't classify 1915, 1944
Sorry, prediction GeneMark_model.109414_t fails validation.
(AGG)	 AG	1397-1507	GT	CAG
(GGG)	 AG	1532-1678	GT	GAG
(AGG)	 AG	1703-1747	GT	AGG
(GAA)	 AG	1779-1787	GT	AAG
(AGC)	 AG	1915-1944	GT	GGG
-recovered GeneMark_model.109414_t, internal, 1397, 1507
-recovered GeneMark_model.109414_t, internal, 1532, 1678
-recovered GeneMark_model.109414_t, internal, 1703, 1747
-recovered GeneMark_model.109414_t, internal, 1779, 1787
-recovered GeneMark_model.109414_t, internal, 1915, 1944

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2301
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support