-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1508

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2167, 2302
Sorry, prediction GlimmerHMM_glimmerT_62681-T1 fails validation.
(ATG)	 GA	1756-1794	GT	CAG
(CTC)	 AG	2167-2302		GA
-recovered GlimmerHMM_glimmerT_62681-T1, initial, 1756, 1794
Couldn't classify 2167, 2302
Sorry, prediction Augustus_model.g41705.t1 fails validation.
(ATG)	 TT	991-1179	GT	GTG
(GTA)	 AG	1699-1794	GT	CAG
(CTC)	 AG	2167-2302		GA
-recovered Augustus_model.g41705.t1, initial, 991, 1179
-recovered Augustus_model.g41705.t1, internal, 1699, 1794
Valid prediction for GlimmerHMM_glimmerT_62680-T1
Couldn't classify 985, 1177
Couldn't classify 2167, 2292
Sorry, prediction snap_scaffold_1508-snap.1-T1 fails validation.
(AGT)	 AG	985-1177	GT	GTG
(GGA)	 AG	1234-1301	GT	CTG
(AGT)	 AG	1420-1794	GT	CAG
(CTC)	 AG	2167-2292	GT	GGG
-recovered snap_scaffold_1508-snap.1-T1, internal, 985, 1177
-recovered snap_scaffold_1508-snap.1-T1, internal, 1234, 1301
-recovered snap_scaffold_1508-snap.1-T1, internal, 1420, 1794
-recovered snap_scaffold_1508-snap.1-T1, internal, 2167, 2292

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 51
Sorry, prediction GeneMark_model.109413_t fails validation.
(TGC)	 AG	44-51	GT	CAG
(GAA)	 AG	77-366	GT	ATG
(GTG)	 AG	390-408	AA	AGA
-recovered GeneMark_model.109413_t, terminal, 390, 408
-recovered GeneMark_model.109413_t, internal, 44, 51
-recovered GeneMark_model.109413_t, internal, 77, 366
Valid prediction for GeneMark_model.109412_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2302
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support