-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1505

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62679-T1
Couldn't classify 1819, 1859
Sorry, prediction GeneMark_model.109409_t fails validation.
(ATG)	 CT	1617-1639	GT	TTG
(AGA)	 AG	1721-1795	GT	CAG
(AGA)	 AG	1819-1859	GT	TCG
-recovered GeneMark_model.109409_t, initial, 1617, 1639
-recovered GeneMark_model.109409_t, internal, 1721, 1795
-recovered GeneMark_model.109409_t, internal, 1819, 1859
Couldn't classify 97, 219
Sorry, prediction Augustus_model.g41704.t1 fails validation.
(GAG)	 AG	97-219	GT	AGG
(AGG)	 AG	427-477	TT	GAT
-recovered Augustus_model.g41704.t1, terminal, 427, 477
-recovered Augustus_model.g41704.t1, internal, 97, 219

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1505-snap.1-T1
Valid prediction for GeneMark_model.109408_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2305
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support