-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1503

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1503-snap.1-T1
Valid prediction for Augustus_model.g41703.t1
Couldn't classify 45, 191
Couldn't classify 2178, 2201
Sorry, prediction GeneMark_model.109407_t fails validation.
(AAG)	 AG	45-191	GT	AGG
(ACG)	 AG	208-378	GT	GGG
(GGG)	 AG	399-437	GC	AGG
(GGA)	 AG	470-481	GT	AGG
(AGG)	 AG	509-583	GT	AGG
(GGG)	 AG	624-680	GT	CTG
(TGC)	 AG	1013-1018	GT	GGG
(ACG)	 AG	1058-1067	GT	GGG
(GCG)	 AG	1710-2155	GT	AGG
(GAG)	 AG	2178-2201	GT	GAG
-recovered GeneMark_model.109407_t, internal, 45, 191
-recovered GeneMark_model.109407_t, internal, 208, 378
-recovered GeneMark_model.109407_t, internal, 399, 437
-recovered GeneMark_model.109407_t, internal, 470, 481
-recovered GeneMark_model.109407_t, internal, 509, 583
-recovered GeneMark_model.109407_t, internal, 624, 680
-recovered GeneMark_model.109407_t, internal, 1013, 1018
-recovered GeneMark_model.109407_t, internal, 1058, 1067
-recovered GeneMark_model.109407_t, internal, 1710, 2155
-recovered GeneMark_model.109407_t, internal, 2178, 2201
Valid prediction for GlimmerHMM_glimmerT_62677-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2311
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support