-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1502

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 102, 236
Sorry, prediction GeneMark_model.109406_t fails validation.
(GTG)	 AG	102-236	GT	CAG
(GCC)	 AG	496-567	GG	GAG
-recovered GeneMark_model.109406_t, terminal, 496, 567
-recovered GeneMark_model.109406_t, internal, 102, 236
Couldn't classify 102, 236
Couldn't classify 1915, 2013
Sorry, prediction snap_scaffold_1502-snap.1-T1 fails validation.
(GTG)	 AG	102-236	GT	CAG
(AGC)	 AG	1915-2013	GT	ACG
-recovered snap_scaffold_1502-snap.1-T1, internal, 102, 236
-recovered snap_scaffold_1502-snap.1-T1, internal, 1915, 2013
Valid prediction for Augustus_model.g41702.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2313
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support