-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_150

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61399-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61398-T1
Valid prediction for GlimmerHMM_glimmerT_61400-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61400-T1 91-443-terminal-1 is invalid.
Couldn't classify 1, 377
Sorry, prediction Augustus_model.g40836.t1 fails validation.
(CCG)	 TC	1-377	GT	ACG
(GAA)	 AG	444-896	GT	CGG
(CAT)	 AG	1294-2034	GC	AAG
-recovered Augustus_model.g40836.t1, terminal, 1294, 2034
-recovered Augustus_model.g40836.t1, internal, 444, 896
-recovered Augustus_model.g40836.t1, internal, 1294, 2034
Couldn't classify 53, 425
Sorry, prediction snap_scaffold_150-snap.1-T1 fails validation.
(TCG)	 AG	53-425	GT	CCG
(GAA)	 AG	444-863	GT	GGG
(CAT)	 AG	1294-2034	GC	AAG
-recovered snap_scaffold_150-snap.1-T1, terminal, 1294, 2034
-recovered snap_scaffold_150-snap.1-T1, internal, 53, 425
-recovered snap_scaffold_150-snap.1-T1, internal, 444, 863
-recovered snap_scaffold_150-snap.1-T1, internal, 1294, 2034
Couldn't classify 26, 425
Sorry, prediction GeneMark_model.106743_t fails validation.
(CTG)	 AG	26-425	GT	CCG
(GTG)	 AG	468-896	GT	CGG
(CAT)	 AG	1294-2034	GC	AAG
-recovered GeneMark_model.106743_t, terminal, 1294, 2034
-recovered GeneMark_model.106743_t, internal, 26, 425
-recovered GeneMark_model.106743_t, internal, 468, 896
-recovered GeneMark_model.106743_t, internal, 1294, 2034

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 12513
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10479
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 1 - 10090