-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_9498536-9673272 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.64583_t Valid prediction for Augustus_model.g25158.t1 Valid prediction for CodingQuarry_transcript_18056-T1 Valid prediction for GeneMark_model.64598_t Valid prediction for snap_scaffold_15-snap.2000-T1 Valid prediction for Augustus_model.g25148.t1 Valid prediction for snap_scaffold_15-snap.1971-T1 Valid prediction for GlimmerHMM_glimmerT_37528-T1 Valid prediction for snap_scaffold_15-snap.1978-T1 Valid prediction for GlimmerHMM_glimmerT_37518-T1 Valid prediction for snap_scaffold_15-snap.2004-T1 Valid prediction for snap_scaffold_15-snap.1993-T1 Valid prediction for GlimmerHMM_glimmerT_37519-T1 Valid prediction for GeneMark_model.64591_t Valid prediction for snap_scaffold_15-snap.1995-T1 Valid prediction for Augustus_model.g25152.t1 Valid prediction for GeneMark_model.64589_t Valid prediction for GeneMark_model.64574_t Valid prediction for GeneMark_model.64585_t Valid prediction for pasa_asmbl_14338.p1 Valid prediction for GeneMark_model.64592_t Valid prediction for snap_scaffold_15-snap.1991-T1 Valid prediction for GeneMark_model.64581_t Valid prediction for snap_scaffold_15-snap.1973-T1 Valid prediction for GlimmerHMM_glimmerT_37524-T1 Valid prediction for Augustus_model.g25157.t1 Valid prediction for GeneMark_model.64561_t Valid prediction for Augustus_model.g25163.t1 Valid prediction for HiQ_model.g25155.t1 Valid prediction for snap_scaffold_15-snap.1996-T1 Valid prediction for snap_scaffold_15-snap.1982-T1 Valid prediction for snap_scaffold_15-snap.1975-T1 Valid prediction for GeneMark_model.64596_t Valid prediction for GeneMark_model.64578_t Valid prediction for HiQ_model.g25156.t1 Valid prediction for GeneMark_model.64559_t Valid prediction for snap_scaffold_15-snap.1974-T1 Valid prediction for GeneMark_model.64580_t Valid prediction for GeneMark_model.64588_t Valid prediction for GeneMark_model.64586_t Valid prediction for GlimmerHMM_glimmerT_37522-T1 Valid prediction for Augustus_model.g25161.t1 Valid prediction for GeneMark_model.64593_t Valid prediction for GlimmerHMM_glimmerT_37523-T1 Valid prediction for GlimmerHMM_glimmerT_37513-T1 Valid prediction for Augustus_model.g25159.t1 Valid prediction for GeneMark_model.64566_t Valid prediction for GeneMark_model.64570_t Valid prediction for GeneMark_model.64573_t Valid prediction for Augustus_model.g25153.t1 Valid prediction for snap_scaffold_15-snap.1976-T1 Valid prediction for snap_scaffold_15-snap.1980-T1 Valid prediction for GlimmerHMM_glimmerT_37510-T1 Valid prediction for GlimmerHMM_glimmerT_37521-T1 Valid prediction for snap_scaffold_15-snap.1992-T1 Valid prediction for snap_scaffold_15-snap.1986-T1 Valid prediction for GlimmerHMM_glimmerT_37512-T1 Valid prediction for GlimmerHMM_glimmerT_37520-T1 Valid prediction for GlimmerHMM_glimmerT_37511-T1 Valid prediction for GeneMark_model.64600_t Valid prediction for snap_scaffold_15-snap.1990-T1 Couldn't classify 70600, 70844 Couldn't classify 71381, 71677 Sorry, prediction pasa_asmbl_14335.p1 fails validation. (AAC) GC 70600-70844 GT AAG (GGT) AG 71175-71277 GT AGG (GAG) AG 71381-71677 CG CCC -recovered pasa_asmbl_14335.p1, internal, 71175, 71277 Valid prediction for snap_scaffold_15-snap.1984-T1 Valid prediction for GlimmerHMM_glimmerT_37517-T1 Valid prediction for GeneMark_model.64575_t Valid prediction for CodingQuarry_transcript_18057-T1 Valid prediction for GlimmerHMM_glimmerT_37515-T1 Valid prediction for snap_scaffold_15-snap.2003-T1 Valid prediction for GlimmerHMM_glimmerT_37527-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.64567_t Valid prediction for GlimmerHMM_glimmerT_37516-T1 Valid prediction for CodingQuarry_transcript_18063-T1 Valid prediction for snap_scaffold_15-snap.2005-T1 Valid prediction for GeneMark_model.64569_t Valid prediction for snap_scaffold_15-snap.1981-T1 Valid prediction for GeneMark_model.64576_t Valid prediction for snap_scaffold_15-snap.1983-T1 Valid prediction for snap_scaffold_15-snap.1977-T1 Valid prediction for GeneMark_model.64599_t Valid prediction for GeneMark_model.64590_t Valid prediction for CodingQuarry_transcript_18064-T1 Valid prediction for snap_scaffold_15-snap.2001-T1 Valid prediction for Augustus_model.g25149.t1 Valid prediction for GeneMark_model.64597_t Valid prediction for GeneMark_model.64584_t Valid prediction for GlimmerHMM_glimmerT_37529-T1 Valid prediction for GeneMark_model.64571_t Valid prediction for GeneMark_model.64565_t Valid prediction for Augustus_model.g25162.t1 Valid prediction for snap_scaffold_15-snap.1999-T1 Valid prediction for snap_scaffold_15-snap.1998-T1 Couldn't classify 35884, 35913 Sorry, prediction CodingQuarry_transcript_18059-T1 fails validation. (ATG) CT 17976-17994 GT AGG (TGC) AG 19627-19836 GT AGG (GTA) AG 22365-22490 GT CAG (GTA) AG 22612-22638 GT AGG (GAG) AG 23924-23950 GT AGG (TTG) AG 24077-26134 GT AGG (CGG) AG 26669-26809 GC AGG (TTT) AG 27159-27215 GT AGG (TCG) AG 28272-28313 GT AGG (AGC) AG 28460-28504 GT AGG (ACA) AG 28594-28641 GT AGG (AAC) AG 28828-28878 GT AGG (CTG) AG 28971-29015 GT AGG (CTG) AG 29278-29331 GT TGG (TGC) AG 29513-29563 GT AGG (GAT) AG 30452-30637 GT GGG (AAA) AG 30842-30889 GT AGG (CAG) AG 31040-31078 GT AGG (AGC) AG 31401-31448 GT AGG (AGG) AG 31533-31586 GT AGG (ATG) AG 31961-32008 GT AGG (TTT) AG 32235-32279 GT AGG (CTA) AG 32501-32533 GT AGG (AAG) AG 33814-33849 GT GAG (TCC) AG 34950-34997 GT TTG (CCA) AG 35743-35787 GT AGG (ATG) CG 35884-35913 GT CAG (AAG) AG 38142-38186 GT AGG (GCC) AG 38343-38491 GC AGG -recovered CodingQuarry_transcript_18059-T1, initial, 17976, 17994 -recovered CodingQuarry_transcript_18059-T1, initial, 31961, 32008 -recovered CodingQuarry_transcript_18059-T1, initial, 35884, 35913 -recovered CodingQuarry_transcript_18059-T1, terminal, 38343, 38491 -recovered CodingQuarry_transcript_18059-T1, internal, 19627, 19836 -recovered CodingQuarry_transcript_18059-T1, internal, 22365, 22490 -recovered CodingQuarry_transcript_18059-T1, internal, 22612, 22638 -recovered CodingQuarry_transcript_18059-T1, internal, 23924, 23950 -recovered CodingQuarry_transcript_18059-T1, internal, 24077, 26134 -recovered CodingQuarry_transcript_18059-T1, internal, 26669, 26809 -recovered CodingQuarry_transcript_18059-T1, internal, 27159, 27215 -recovered CodingQuarry_transcript_18059-T1, internal, 28272, 28313 -recovered CodingQuarry_transcript_18059-T1, internal, 28460, 28504 -recovered CodingQuarry_transcript_18059-T1, internal, 28594, 28641 -recovered CodingQuarry_transcript_18059-T1, internal, 28828, 28878 -recovered CodingQuarry_transcript_18059-T1, internal, 28971, 29015 -recovered CodingQuarry_transcript_18059-T1, internal, 29278, 29331 -recovered CodingQuarry_transcript_18059-T1, internal, 29513, 29563 -recovered CodingQuarry_transcript_18059-T1, internal, 30452, 30637 -recovered CodingQuarry_transcript_18059-T1, internal, 30842, 30889 -recovered CodingQuarry_transcript_18059-T1, internal, 31040, 31078 -recovered CodingQuarry_transcript_18059-T1, internal, 31401, 31448 -recovered CodingQuarry_transcript_18059-T1, internal, 31533, 31586 -recovered CodingQuarry_transcript_18059-T1, internal, 31961, 32008 -recovered CodingQuarry_transcript_18059-T1, internal, 32235, 32279 -recovered CodingQuarry_transcript_18059-T1, internal, 32501, 32533 -recovered CodingQuarry_transcript_18059-T1, internal, 33814, 33849 -recovered CodingQuarry_transcript_18059-T1, internal, 34950, 34997 -recovered CodingQuarry_transcript_18059-T1, internal, 35743, 35787 -recovered CodingQuarry_transcript_18059-T1, internal, 38142, 38186 -recovered CodingQuarry_transcript_18059-T1, internal, 38343, 38491 Valid prediction for snap_scaffold_15-snap.1989-T1 Valid prediction for GeneMark_model.64582_t Valid prediction for pasa_asmbl_15414.p1 Valid prediction for Augustus_model.g25164.t1 Valid prediction for GeneMark_model.64579_t Valid prediction for GeneMark_model.64563_t Valid prediction for snap_scaffold_15-snap.2002-T1 Valid prediction for pasa_asmbl_15405.p1 Valid prediction for snap_scaffold_15-snap.1994-T1 Valid prediction for GlimmerHMM_glimmerT_37525-T1 Valid prediction for GlimmerHMM_glimmerT_37514-T1 Valid prediction for snap_scaffold_15-snap.1987-T1 Valid prediction for GeneMark_model.64572_t Couldn't classify 35884, 35913 Sorry, prediction CodingQuarry_transcript_18060-T1 fails validation. (ATG) CT 17976-17994 GT AGG (TGC) AG 19627-19836 GT AGG (GTA) AG 22365-22490 GT CAG (GTA) AG 22612-22638 GT AGG (GAG) AG 23924-23950 GT AGG (TTG) AG 24077-26134 GT AGG (AGC) AG 26365-26514 GT AGG (ATT) AG 26648-26809 GC AGG (TTT) AG 27159-27215 GT AGG (TCG) AG 28272-28313 GT AGG (AGC) AG 28460-28504 GT AGG (ACA) AG 28594-28641 GT AGG (AAC) AG 28828-28878 GT AGG (CTG) AG 28971-29015 GT AGG (CTG) AG 29278-29331 GT TGG (TGC) AG 29513-29563 GT AGG (GAT) AG 30452-30637 GT GGG (AAA) AG 30842-30889 GT AGG (CAG) AG 31040-31078 GT AGG (AGC) AG 31401-31448 GT AGG (AGG) AG 31533-31586 GT AGG (ATG) AG 31961-32008 GT AGG (TTT) AG 32235-32279 GT AGG (CTA) AG 32501-32533 GT AGG (TCC) AG 34950-34997 GT TTG (CCA) AG 35743-35787 GT AGG (ATG) CG 35884-35913 GT CAG (AAG) AG 38142-38186 GT AGG (GCC) AG 38343-38491 GC AGG -recovered CodingQuarry_transcript_18060-T1, initial, 17976, 17994 -recovered CodingQuarry_transcript_18060-T1, initial, 31961, 32008 -recovered CodingQuarry_transcript_18060-T1, initial, 35884, 35913 -recovered CodingQuarry_transcript_18060-T1, terminal, 38343, 38491 -recovered CodingQuarry_transcript_18060-T1, internal, 19627, 19836 -recovered CodingQuarry_transcript_18060-T1, internal, 22365, 22490 -recovered CodingQuarry_transcript_18060-T1, internal, 22612, 22638 -recovered CodingQuarry_transcript_18060-T1, internal, 23924, 23950 -recovered CodingQuarry_transcript_18060-T1, internal, 24077, 26134 -recovered CodingQuarry_transcript_18060-T1, internal, 26365, 26514 -recovered CodingQuarry_transcript_18060-T1, internal, 26648, 26809 -recovered CodingQuarry_transcript_18060-T1, internal, 27159, 27215 -recovered CodingQuarry_transcript_18060-T1, internal, 28272, 28313 -recovered CodingQuarry_transcript_18060-T1, internal, 28460, 28504 -recovered CodingQuarry_transcript_18060-T1, internal, 28594, 28641 -recovered CodingQuarry_transcript_18060-T1, internal, 28828, 28878 -recovered CodingQuarry_transcript_18060-T1, internal, 28971, 29015 -recovered CodingQuarry_transcript_18060-T1, internal, 29278, 29331 -recovered CodingQuarry_transcript_18060-T1, internal, 29513, 29563 -recovered CodingQuarry_transcript_18060-T1, internal, 30452, 30637 -recovered CodingQuarry_transcript_18060-T1, internal, 30842, 30889 -recovered CodingQuarry_transcript_18060-T1, internal, 31040, 31078 -recovered CodingQuarry_transcript_18060-T1, internal, 31401, 31448 -recovered CodingQuarry_transcript_18060-T1, internal, 31533, 31586 -recovered CodingQuarry_transcript_18060-T1, internal, 31961, 32008 -recovered CodingQuarry_transcript_18060-T1, internal, 32235, 32279 -recovered CodingQuarry_transcript_18060-T1, internal, 32501, 32533 -recovered CodingQuarry_transcript_18060-T1, internal, 34950, 34997 -recovered CodingQuarry_transcript_18060-T1, internal, 35743, 35787 -recovered CodingQuarry_transcript_18060-T1, internal, 38142, 38186 -recovered CodingQuarry_transcript_18060-T1, internal, 38343, 38491 Valid prediction for CodingQuarry_transcript_18062-T1 Valid prediction for HiQ_model.g25154.t1 Valid prediction for GeneMark_model.64558_t Valid prediction for CodingQuarry_transcript_18055-T1 Valid prediction for GeneMark_model.64568_t Valid prediction for snap_scaffold_15-snap.1997-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.64564_t Couldn't classify 35884, 35913 Sorry, prediction CodingQuarry_transcript_18058-T1 fails validation. (ATG) CT 17976-17994 GT AGG (TGC) AG 19627-19836 GT AGG (GTA) AG 22365-22490 GT CAG (GTA) AG 22612-22638 GT AGG (GAG) AG 23924-23950 GT AGG (TTG) AG 24077-26134 GT AGG (AGC) AG 26365-26514 GT AGG (CGG) AG 26669-26809 GC AGG (TTT) AG 27159-27215 GT AGG (TCG) AG 28272-28313 GT AGG (AGC) AG 28460-28504 GT AGG (ACA) AG 28594-28641 GT AGG (AAC) AG 28828-28878 GT AGG (CTG) AG 28971-29015 GT AGG (CTG) AG 29278-29331 GT TGG (TGC) AG 29513-29563 GT AGG (GAT) AG 30452-30637 GT GGG (AAA) AG 30842-30889 GT AGG (CAG) AG 31040-31078 GT AGG (AGC) AG 31401-31448 GT AGG (AGG) AG 31533-31586 GT AGG (ATG) AG 31961-32008 GT AGG (TTT) AG 32235-32279 GT AGG (CTA) AG 32501-32533 GT AGG (AAG) AG 33814-33849 GT GAG (TCC) AG 34950-34997 GT TTG (CCA) AG 35743-35787 GT AGG (ATG) CG 35884-35913 GT CAG (AAG) AG 38142-38186 GT AGG (GCC) AG 38343-38491 GC AGG -recovered CodingQuarry_transcript_18058-T1, initial, 17976, 17994 -recovered CodingQuarry_transcript_18058-T1, initial, 31961, 32008 -recovered CodingQuarry_transcript_18058-T1, initial, 35884, 35913 -recovered CodingQuarry_transcript_18058-T1, terminal, 38343, 38491 -recovered CodingQuarry_transcript_18058-T1, internal, 19627, 19836 -recovered CodingQuarry_transcript_18058-T1, internal, 22365, 22490 -recovered CodingQuarry_transcript_18058-T1, internal, 22612, 22638 -recovered CodingQuarry_transcript_18058-T1, internal, 23924, 23950 -recovered CodingQuarry_transcript_18058-T1, internal, 24077, 26134 -recovered CodingQuarry_transcript_18058-T1, internal, 26365, 26514 -recovered CodingQuarry_transcript_18058-T1, internal, 26669, 26809 -recovered CodingQuarry_transcript_18058-T1, internal, 27159, 27215 -recovered CodingQuarry_transcript_18058-T1, internal, 28272, 28313 -recovered CodingQuarry_transcript_18058-T1, internal, 28460, 28504 -recovered CodingQuarry_transcript_18058-T1, internal, 28594, 28641 -recovered CodingQuarry_transcript_18058-T1, internal, 28828, 28878 -recovered CodingQuarry_transcript_18058-T1, internal, 28971, 29015 -recovered CodingQuarry_transcript_18058-T1, internal, 29278, 29331 -recovered CodingQuarry_transcript_18058-T1, internal, 29513, 29563 -recovered CodingQuarry_transcript_18058-T1, internal, 30452, 30637 -recovered CodingQuarry_transcript_18058-T1, internal, 30842, 30889 -recovered CodingQuarry_transcript_18058-T1, internal, 31040, 31078 -recovered CodingQuarry_transcript_18058-T1, internal, 31401, 31448 -recovered CodingQuarry_transcript_18058-T1, internal, 31533, 31586 -recovered CodingQuarry_transcript_18058-T1, internal, 31961, 32008 -recovered CodingQuarry_transcript_18058-T1, internal, 32235, 32279 -recovered CodingQuarry_transcript_18058-T1, internal, 32501, 32533 -recovered CodingQuarry_transcript_18058-T1, internal, 33814, 33849 -recovered CodingQuarry_transcript_18058-T1, internal, 34950, 34997 -recovered CodingQuarry_transcript_18058-T1, internal, 35743, 35787 -recovered CodingQuarry_transcript_18058-T1, internal, 38142, 38186 -recovered CodingQuarry_transcript_18058-T1, internal, 38343, 38491 Valid prediction for GeneMark_model.64601_t Valid prediction for GlimmerHMM_glimmerT_37526-T1 Valid prediction for GeneMark_model.64594_t Valid prediction for Augustus_model.g25150.t1 Valid prediction for CodingQuarry_transcript_18061-T1 Valid prediction for snap_scaffold_15-snap.1972-T1 Valid prediction for GeneMark_model.64595_t Valid prediction for GlimmerHMM_glimmerT_37508-T1 Valid prediction for GeneMark_model.64562_t Valid prediction for GeneMark_model.64587_t Couldn't classify 26671, 26809 Couldn't classify 34950, 34996 Sorry, prediction pasa_asmbl_15412.p1 fails validation. (GTT) CG 26671-26809 GC AGG (TTT) AG 27159-27215 GT AGG (TCG) AG 28272-28313 GT AGG (AGC) AG 28460-28504 GT AGG (ACA) AG 28594-28641 GT AGG (AAC) AG 28828-28878 GT AGG (CTG) AG 28971-29015 GT AGG (CTG) AG 29278-29331 GT TGG (TGC) AG 29513-29563 GT AGG (GAT) AG 30452-30637 GT GGG (AAA) AG 30842-30889 GT AGG (CAG) AG 31040-31078 GT AGG (AGC) AG 31401-31448 GT AGG (AGG) AG 31533-31586 GT AGG (ATG) AG 31961-32008 GT AGG (TTT) AG 32235-32279 GT AGG (CTA) AG 32501-32533 GT AGG (TCC) AG 34950-34996 TG CTT -recovered pasa_asmbl_15412.p1, initial, 31961, 32008 -recovered pasa_asmbl_15412.p1, internal, 27159, 27215 -recovered pasa_asmbl_15412.p1, internal, 28272, 28313 -recovered pasa_asmbl_15412.p1, internal, 28460, 28504 -recovered pasa_asmbl_15412.p1, internal, 28594, 28641 -recovered pasa_asmbl_15412.p1, internal, 28828, 28878 -recovered pasa_asmbl_15412.p1, internal, 28971, 29015 -recovered pasa_asmbl_15412.p1, internal, 29278, 29331 -recovered pasa_asmbl_15412.p1, internal, 29513, 29563 -recovered pasa_asmbl_15412.p1, internal, 30452, 30637 -recovered pasa_asmbl_15412.p1, internal, 30842, 30889 -recovered pasa_asmbl_15412.p1, internal, 31040, 31078 -recovered pasa_asmbl_15412.p1, internal, 31401, 31448 -recovered pasa_asmbl_15412.p1, internal, 31533, 31586 -recovered pasa_asmbl_15412.p1, internal, 31961, 32008 -recovered pasa_asmbl_15412.p1, internal, 32235, 32279 -recovered pasa_asmbl_15412.p1, internal, 32501, 32533 Valid prediction for GeneMark_model.64560_t Valid prediction for Augustus_model.g25160.t1 Valid prediction for snap_scaffold_15-snap.1985-T1 Valid prediction for snap_scaffold_15-snap.1988-T1 Valid prediction for Augustus_model.g25151.t1 Valid prediction for snap_scaffold_15-snap.1970-T1 Valid prediction for GlimmerHMM_glimmerT_37509-T1 Valid prediction for snap_scaffold_15-snap.1979-T1 Valid prediction for GeneMark_model.64577_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15141, rend_intergenic: 10942 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16239, rend_intergenic: 16132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20117, rend_intergenic: 16920 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40460, rend_intergenic: 40393 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43407, rend_intergenic: 42214 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49560, rend_intergenic: 43448 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51836, rend_intergenic: 49615 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54460, rend_intergenic: 51915 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56016, rend_intergenic: 54495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72123, rend_intergenic: 68299 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92408, rend_intergenic: 83542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97796, rend_intergenic: 95395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113792, rend_intergenic: 108785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128196, rend_intergenic: 122773 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146922, rend_intergenic: 141916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152408, rend_intergenic: 147906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171813, rend_intergenic: 167284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 174737 -exon list size: 524 building trellis 0.2 0.4 0.6 0.8 1.0 1.1 1.3 1.5 1.7 1.9 2.1 2.3 2.5 2.7 2.9 3.0 3.2 3.4 3.6 3.8 4.0 4.2 4.4 4.6 4.8 4.9 5.1 5.3 5.5 5.7 5.9 6.1 6.3 6.5 6.7 6.8 7.0 7.2 7.4 7.6 7.8 8.0 8.2 8.4 8.6 8.7 8.9 9.1 9.3 9.5 9.7 9.9 10.1 10.3 10.5 10.6 10.8 11.0 11.2 11.4 11.6 11.8 12.0 12.2 12.4 12.5 12.7 12.9 13.1 13.3 13.5 13.7 13.9 14.1 14.3 14.4 14.6 14.8 15.0 15.2 15.4 15.6 15.8 16.0 16.2 16.3 16.5 16.7 16.9 17.1 17.3 17.5 17.7 17.9 18.1 18.3 18.4 18.6 18.8 19.0 19.2 19.4 19.6 19.8 20.0 20.2 20.3 20.5 20.7 20.9 21.1 21.3 21.5 21.7 21.9 22.1 22.2 22.4 22.6 22.8 23.0 23.2 23.4 23.6 23.8 24.0 24.1 24.3 24.5 24.7 24.9 25.1 25.3 25.5 25.7 25.9 26.0 26.2 26.4 26.6 26.8 27.0 27.2 27.4 27.6 27.8 27.9 28.1 28.3 28.5 28.7 28.9 29.1 29.3 29.5 29.7 29.8 30.0 30.2 30.4 30.6 30.8 31.0 31.2 31.4 31.6 31.7 31.9 32.1 32.3 32.5 32.7 32.9 33.1 33.3 33.5 33.7 33.8 34.0 34.2 34.4 34.6 34.8 35.0 35.2 35.4 35.6 35.7 35.9 36.1 36.3 36.5 36.7 36.9 37.1 37.3 37.5 37.6 37.8 38.0 38.2 38.4 38.6 38.8 39.0 39.2 39.4 39.5 39.7 39.9 40.1 40.3 40.5 40.7 40.9 41.1 41.3 41.4 41.6 41.8 42.0 42.2 42.4 42.6 42.8 43.0 43.2 43.3 43.5 43.7 43.9 44.1 44.3 44.5 44.7 44.9 45.1 45.2 45.4 45.6 45.8 46.0 46.2 46.4 46.6 46.8 47.0 47.1 47.3 47.5 47.7 47.9 48.1 48.3 48.5 48.7 48.9 49.0 49.2 49.4 49.6 49.8 50.0 50.2 50.4 50.6 50.8 51.0 51.1 51.3 51.5 51.7 51.9 52.1 52.3 52.5 52.7 52.9 53.0 53.2 53.4 53.6 53.8 54.0 54.2 54.4 54.6 54.8 54.9 55.1 55.3 55.5 55.7 55.9 56.1 56.3 56.5 56.7 56.8 57.0 57.2 57.4 57.6 57.8 58.0 58.2 58.4 58.6 58.7 58.9 59.1 59.3 59.5 59.7 59.9 60.1 60.3 60.5 60.6 60.8 61.0 61.2 61.4 61.6 61.8 62.0 62.2 62.4 62.5 62.7 62.9 63.1 63.3 63.5 63.7 63.9 64.1 64.3 64.4 64.6 64.8 65.0 65.2 65.4 65.6 65.8 66.0 66.2 66.3 66.5 66.7 66.9 67.1 67.3 67.5 67.7 67.9 68.1 68.3 68.4 68.6 68.8 69.0 69.2 69.4 69.6 69.8 70.0 70.2 70.3 70.5 70.7 70.9 71.1 71.3 71.5 71.7 71.9 72.1 72.2 72.4 72.6 72.8 73.0 73.2 73.4 73.6 73.8 74.0 74.1 74.3 74.5 74.7 74.9 75.1 75.3 75.5 75.7 75.9 76.0 76.2 76.4 76.6 76.8 77.0 77.2 77.4 77.6 77.8 77.9 78.1 78.3 78.5 78.7 78.9 79.1 79.3 79.5 79.7 79.8 80.0 80.2 80.4 80.6 80.8 81.0 81.2 81.4 81.6 81.7 81.9 82.1 82.3 82.5 82.7 82.9 83.1 83.3 83.5 83.7 83.8 84.0 84.2 84.4 84.6 84.8 85.0 85.2 85.4 85.6 85.7 85.9 86.1 86.3 86.5 86.7 86.9 87.1 87.3 87.5 87.6 87.8 88.0 88.2 88.4 88.6 88.8 89.0 89.2 89.4 89.5 89.7 89.9 90.1 90.3 90.5 90.7 90.9 91.1 91.3 91.4 91.6 91.8 92.0 92.2 92.4 92.6 92.8 93.0 93.2 93.3 93.5 93.7 93.9 94.1 94.3 94.5 94.7 94.9 95.1 95.2 95.4 95.6 95.8 96.0 96.2 96.4 96.6 96.8 97.0 97.1 97.3 97.5 97.7 97.9 98.1 98.3 98.5 98.7 98.9 99.0 99.2 99.4 99.6 99.8 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 15141, rend_intergenic: 10942 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16239, rend_intergenic: 16132 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20117, rend_intergenic: 16920 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40460, rend_intergenic: 40393 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43407, rend_intergenic: 42214 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49560, rend_intergenic: 43448 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51836, rend_intergenic: 49615 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54460, rend_intergenic: 51915 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56016, rend_intergenic: 54495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72123, rend_intergenic: 68299 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92408, rend_intergenic: 83542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97796, rend_intergenic: 95395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113792, rend_intergenic: 108785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128196, rend_intergenic: 122773 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146922, rend_intergenic: 141916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152408, rend_intergenic: 147906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171813, rend_intergenic: 167284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 14 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 13251 -exon list size: 24 building trellis 3.8 7.7 11.5 15.4 19.2 23.1 26.9 30.8 34.6 38.5 42.3 46.2 50.0 53.8 57.7 61.5 65.4 69.2 73.1 76.9 80.8 84.6 88.5 92.3 96.2 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 13112 -exon list size: 21 building trellis 4.3 8.7 13.0 17.4 21.7 26.1 30.4 34.8 39.1 43.5 47.8 52.2 56.5 60.9 65.2 69.6 73.9 78.3 82.6 87.0 91.3 95.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12608 -exon list size: 19 building trellis 4.8 9.5 14.3 19.0 23.8 28.6 33.3 38.1 42.9 47.6 52.4 57.1 61.9 66.7 71.4 76.2 81.0 85.7 90.5 95.2 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support