-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_7476374-7684815

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.1623-T1
Valid prediction for GeneMark_model.64105_t
Valid prediction for snap_scaffold_15-snap.1607-T1
Valid prediction for Augustus_model.g24979.t1
Valid prediction for Augustus_model.g24980.t1
Valid prediction for GlimmerHMM_glimmerT_37250-T1
Valid prediction for GeneMark_model.64091_t
Valid prediction for GlimmerHMM_glimmerT_37264-T1
Valid prediction for GlimmerHMM_glimmerT_37261-T1
Valid prediction for GeneMark_model.64108_t
Valid prediction for snap_scaffold_15-snap.1600-T1
Valid prediction for snap_scaffold_15-snap.1604-T1
Valid prediction for GlimmerHMM_glimmerT_37268-T1
Valid prediction for GlimmerHMM_glimmerT_37251-T1
Valid prediction for GlimmerHMM_glimmerT_37257-T1
Valid prediction for GeneMark_model.64085_t
Valid prediction for snap_scaffold_15-snap.1612-T1
Valid prediction for snap_scaffold_15-snap.1588-T1
Valid prediction for GeneMark_model.64083_t
Valid prediction for snap_scaffold_15-snap.1590-T1
Valid prediction for Augustus_model.g24984.t1
Valid prediction for snap_scaffold_15-snap.1609-T1
Valid prediction for Augustus_model.g24986.t1
Valid prediction for GeneMark_model.64107_t
Valid prediction for GeneMark_model.64094_t
Valid prediction for GeneMark_model.64081_t
Valid prediction for GeneMark_model.64120_t
Valid prediction for GlimmerHMM_glimmerT_37266-T1
Valid prediction for GeneMark_model.64109_t
Valid prediction for snap_scaffold_15-snap.1620-T1
Valid prediction for Augustus_model.g24982.t1
Valid prediction for snap_scaffold_15-snap.1606-T1
Valid prediction for GeneMark_model.64101_t
Valid prediction for snap_scaffold_15-snap.1605-T1
Valid prediction for snap_scaffold_15-snap.1598-T1
Valid prediction for GeneMark_model.64103_t
Valid prediction for snap_scaffold_15-snap.1619-T1
Valid prediction for GlimmerHMM_glimmerT_37262-T1
Valid prediction for GlimmerHMM_glimmerT_37274-T1
Valid prediction for snap_scaffold_15-snap.1587-T1
Valid prediction for GlimmerHMM_glimmerT_37260-T1
Valid prediction for Augustus_model.g24985.t1
Valid prediction for GlimmerHMM_glimmerT_37275-T1
Valid prediction for snap_scaffold_15-snap.1625-T1
Valid prediction for snap_scaffold_15-snap.1601-T1
Valid prediction for GlimmerHMM_glimmerT_37255-T1
Valid prediction for snap_scaffold_15-snap.1594-T1
Valid prediction for GeneMark_model.64116_t
Valid prediction for GeneMark_model.64118_t
Valid prediction for GlimmerHMM_glimmerT_37254-T1
Valid prediction for GlimmerHMM_glimmerT_37270-T1
Valid prediction for GlimmerHMM_glimmerT_37272-T1
Valid prediction for pasa_asmbl_14240.p1
Valid prediction for snap_scaffold_15-snap.1622-T1
Valid prediction for GeneMark_model.64087_t
Valid prediction for GlimmerHMM_glimmerT_37267-T1
Valid prediction for snap_scaffold_15-snap.1602-T1
Valid prediction for GeneMark_model.64117_t
Valid prediction for GeneMark_model.64092_t
Valid prediction for snap_scaffold_15-snap.1616-T1
Valid prediction for GeneMark_model.64113_t
Valid prediction for GlimmerHMM_glimmerT_37253-T1
Valid prediction for GlimmerHMM_glimmerT_37258-T1
Valid prediction for GeneMark_model.64100_t
Valid prediction for GeneMark_model.64089_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.1592-T1
Valid prediction for GlimmerHMM_glimmerT_37265-T1
Valid prediction for snap_scaffold_15-snap.1618-T1
Valid prediction for snap_scaffold_15-snap.1596-T1
Valid prediction for GlimmerHMM_glimmerT_37259-T1
Valid prediction for GeneMark_model.64093_t
Valid prediction for GeneMark_model.64112_t
Valid prediction for snap_scaffold_15-snap.1608-T1
Valid prediction for GeneMark_model.64114_t
Valid prediction for GeneMark_model.64106_t
Valid prediction for snap_scaffold_15-snap.1613-T1
Valid prediction for snap_scaffold_15-snap.1591-T1
Valid prediction for GlimmerHMM_glimmerT_37256-T1
Valid prediction for GlimmerHMM_glimmerT_37273-T1
Valid prediction for GlimmerHMM_glimmerT_37248-T1
Valid prediction for snap_scaffold_15-snap.1603-T1
Valid prediction for GeneMark_model.64111_t
Valid prediction for GeneMark_model.64110_t
Valid prediction for GeneMark_model.64095_t
Valid prediction for Augustus_model.g24981.t1
Valid prediction for GlimmerHMM_glimmerT_37263-T1
Valid prediction for GeneMark_model.64099_t
Valid prediction for snap_scaffold_15-snap.1597-T1
Valid prediction for GeneMark_model.64121_t
Valid prediction for GeneMark_model.64119_t
Valid prediction for GlimmerHMM_glimmerT_37271-T1
Valid prediction for snap_scaffold_15-snap.1615-T1
Valid prediction for snap_scaffold_15-snap.1593-T1
Valid prediction for HiQ_model.g24987.t1
Valid prediction for snap_scaffold_15-snap.1595-T1
Valid prediction for GlimmerHMM_glimmerT_37277-T1
Valid prediction for GeneMark_model.64115_t
Valid prediction for GlimmerHMM_glimmerT_37252-T1
Valid prediction for snap_scaffold_15-snap.1589-T1
Valid prediction for GlimmerHMM_glimmerT_37247-T1
Valid prediction for GeneMark_model.64086_t
Valid prediction for GeneMark_model.64122_t
Valid prediction for GeneMark_model.64098_t
Valid prediction for GeneMark_model.64097_t
Valid prediction for pasa_asmbl_15326.p1
Valid prediction for GlimmerHMM_glimmerT_37276-T1
Valid prediction for GeneMark_model.64090_t
Valid prediction for GlimmerHMM_glimmerT_37269-T1
Valid prediction for GeneMark_model.64082_t
Valid prediction for GeneMark_model.64088_t
Valid prediction for snap_scaffold_15-snap.1624-T1
Valid prediction for GeneMark_model.64102_t
Valid prediction for snap_scaffold_15-snap.1614-T1
Valid prediction for GeneMark_model.64096_t
Valid prediction for snap_scaffold_15-snap.1626-T1
Valid prediction for snap_scaffold_15-snap.1617-T1
Valid prediction for Augustus_model.g24983.t1
Valid prediction for snap_scaffold_15-snap.1599-T1
Valid prediction for snap_scaffold_15-snap.1610-T1
Valid prediction for snap_scaffold_15-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_37249-T1
Valid prediction for GeneMark_model.64084_t
Valid prediction for snap_scaffold_15-snap.1586-T1
Valid prediction for snap_scaffold_15-snap.1611-T1
Valid prediction for GeneMark_model.64104_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20284, rend_intergenic: 3749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23193, rend_intergenic: 20578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24258, rend_intergenic: 23391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30583, rend_intergenic: 27603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42100, rend_intergenic: 40252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44554, rend_intergenic: 43557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54419, rend_intergenic: 52578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57593, rend_intergenic: 56133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60186, rend_intergenic: 57593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93574, rend_intergenic: 82398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103326, rend_intergenic: 102697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138244, rend_intergenic: 131593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173171, rend_intergenic: 169850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180326, rend_intergenic: 174338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191950, rend_intergenic: 182405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196608, rend_intergenic: 195339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201889, rend_intergenic: 197670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202090, rend_intergenic: 201995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 208442
-exon list size: 572


building trellis

0.2    
0.3    
0.5    
0.7    
0.9    
1.0    
1.2    
1.4    
1.6    
1.7    
1.9    
2.1    
2.3    
2.4    
2.6    
2.8    
3.0    
3.1    
3.3    
3.5    
3.7    
3.8    
4.0    
4.2    
4.4    
4.5    
4.7    
4.9    
5.1    
5.2    
5.4    
5.6    
5.7    
5.9    
6.1    
6.3    
6.4    
6.6    
6.8    
7.0    
7.1    
7.3    
7.5    
7.7    
7.8    
8.0    
8.2    
8.4    
8.5    
8.7    
8.9    
9.1    
9.2    
9.4    
9.6    
9.8    
9.9    
10.1    
10.3    
10.5    
10.6    
10.8    
11.0    
11.1    
11.3    
11.5    
11.7    
11.8    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.1    
13.2    
13.4    
13.6    
13.8    
13.9    
14.1    
14.3    
14.5    
14.6    
14.8    
15.0    
15.2    
15.3    
15.5    
15.7    
15.9    
16.0    
16.2    
16.4    
16.6    
16.7    
16.9    
17.1    
17.2    
17.4    
17.6    
17.8    
17.9    
18.1    
18.3    
18.5    
18.6    
18.8    
19.0    
19.2    
19.3    
19.5    
19.7    
19.9    
20.0    
20.2    
20.4    
20.6    
20.7    
20.9    
21.1    
21.3    
21.4    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.6    
22.8    
23.0    
23.2    
23.3    
23.5    
23.7    
23.9    
24.0    
24.2    
24.4    
24.6    
24.7    
24.9    
25.1    
25.3    
25.4    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.8    
27.0    
27.2    
27.4    
27.5    
27.7    
27.9    
28.0    
28.2    
28.4    
28.6    
28.7    
28.9    
29.1    
29.3    
29.4    
29.6    
29.8    
30.0    
30.1    
30.3    
30.5    
30.7    
30.8    
31.0    
31.2    
31.4    
31.5    
31.7    
31.9    
32.1    
32.2    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
34.0    
34.1    
34.3    
34.5    
34.7    
34.8    
35.0    
35.2    
35.4    
35.5    
35.7    
35.9    
36.1    
36.2    
36.4    
36.6    
36.8    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.9    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.1    
40.2    
40.4    
40.6    
40.8    
40.9    
41.1    
41.3    
41.5    
41.6    
41.8    
42.0    
42.2    
42.3    
42.5    
42.7    
42.9    
43.0    
43.2    
43.4    
43.6    
43.7    
43.9    
44.1    
44.3    
44.4    
44.6    
44.8    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.2    
46.3    
46.5    
46.7    
46.9    
47.0    
47.2    
47.4    
47.6    
47.7    
47.9    
48.1    
48.3    
48.4    
48.6    
48.8    
49.0    
49.1    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.9    
51.0    
51.2    
51.4    
51.6    
51.7    
51.9    
52.1    
52.3    
52.4    
52.6    
52.8    
53.0    
53.1    
53.3    
53.5    
53.7    
53.8    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.1    
56.3    
56.4    
56.6    
56.8    
57.0    
57.1    
57.3    
57.5    
57.7    
57.8    
58.0    
58.2    
58.4    
58.5    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.2    
63.4    
63.6    
63.8    
63.9    
64.1    
64.3    
64.5    
64.6    
64.8    
65.0    
65.2    
65.3    
65.5    
65.7    
65.9    
66.0    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.8    
67.9    
68.1    
68.3    
68.5    
68.6    
68.8    
69.0    
69.2    
69.3    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.6    
70.7    
70.9    
71.1    
71.3    
71.4    
71.6    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
73.0    
73.2    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.8    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.6    
78.7    
78.9    
79.1    
79.3    
79.4    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.4    
81.5    
81.7    
81.9    
82.1    
82.2    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.8    
84.0    
84.1    
84.3    
84.5    
84.7    
84.8    
85.0    
85.2    
85.4    
85.5    
85.7    
85.9    
86.1    
86.2    
86.4    
86.6    
86.8    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.5    
91.6    
91.8    
92.0    
92.2    
92.3    
92.5    
92.7    
92.9    
93.0    
93.2    
93.4    
93.6    
93.7    
93.9    
94.1    
94.3    
94.4    
94.6    
94.8    
94.9    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.2    
96.3    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.6    
97.7    
97.9    
98.1    
98.3    
98.4    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 20284, rend_intergenic: 3749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23193, rend_intergenic: 20578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24258, rend_intergenic: 23391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30583, rend_intergenic: 27603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42100, rend_intergenic: 40252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44554, rend_intergenic: 43557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54419, rend_intergenic: 52578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57593, rend_intergenic: 56133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60186, rend_intergenic: 57593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93574, rend_intergenic: 82398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103326, rend_intergenic: 102697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138244, rend_intergenic: 131593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173171, rend_intergenic: 169850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180326, rend_intergenic: 174338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191950, rend_intergenic: 182405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196608, rend_intergenic: 195339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201889, rend_intergenic: 197670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202090, rend_intergenic: 201995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support