-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_743796-937620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.62399_t
Valid prediction for snap_scaffold_15-snap.179-T1
Valid prediction for snap_scaffold_15-snap.205-T1
Valid prediction for Augustus_model.g24394.t1
Valid prediction for snap_scaffold_15-snap.201-T1
Valid prediction for Augustus_model.g24402.t1
Valid prediction for GeneMark_model.62425_t
Valid prediction for GeneMark_model.62428_t
Valid prediction for snap_scaffold_15-snap.177-T1
Valid prediction for snap_scaffold_15-snap.187-T1
Valid prediction for GeneMark_model.62435_t
Valid prediction for GeneMark_model.62421_t
Valid prediction for snap_scaffold_15-snap.180-T1
Valid prediction for GeneMark_model.62403_t
Valid prediction for GeneMark_model.62419_t
Valid prediction for Augustus_model.g24403.t1
Valid prediction for Augustus_model.g24396.t1
Valid prediction for GlimmerHMM_glimmerT_36293-T1
Valid prediction for snap_scaffold_15-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_36290-T1
Valid prediction for GeneMark_model.62414_t
Valid prediction for GeneMark_model.62415_t
Valid prediction for GlimmerHMM_glimmerT_36298-T1
Valid prediction for GlimmerHMM_glimmerT_36291-T1
Valid prediction for CodingQuarry_transcript_17854-T1
Valid prediction for snap_scaffold_15-snap.208-T1
Valid prediction for GeneMark_model.62405_t
Valid prediction for snap_scaffold_15-snap.195-T1
Valid prediction for GeneMark_model.62410_t
Valid prediction for GeneMark_model.62402_t
Valid prediction for snap_scaffold_15-snap.192-T1
Valid prediction for pasa_asmbl_13927.p1
Valid prediction for snap_scaffold_15-snap.178-T1
Valid prediction for GeneMark_model.62409_t
Valid prediction for GlimmerHMM_glimmerT_36286-T1
Valid prediction for snap_scaffold_15-snap.186-T1
Valid prediction for GeneMark_model.62408_t
Valid prediction for GlimmerHMM_glimmerT_36288-T1
Valid prediction for snap_scaffold_15-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_36299-T1
Valid prediction for GeneMark_model.62406_t
Valid prediction for HiQ_model.g24399.t1
Valid prediction for GeneMark_model.62412_t
Valid prediction for snap_scaffold_15-snap.190-T1
Valid prediction for snap_scaffold_15-snap.198-T1
Valid prediction for GlimmerHMM_glimmerT_36289-T1
Valid prediction for snap_scaffold_15-snap.204-T1
Valid prediction for snap_scaffold_15-snap.203-T1
Valid prediction for snap_scaffold_15-snap.213-T1
Valid prediction for snap_scaffold_15-snap.202-T1
Valid prediction for GeneMark_model.62429_t
Valid prediction for snap_scaffold_15-snap.182-T1
Valid prediction for Augustus_model.g24397.t1
Valid prediction for snap_scaffold_15-snap.189-T1
Valid prediction for Augustus_model.g24395.t1
Valid prediction for GlimmerHMM_glimmerT_36297-T1
Valid prediction for GeneMark_model.62401_t
Valid prediction for snap_scaffold_15-snap.196-T1
Valid prediction for snap_scaffold_15-snap.199-T1
Valid prediction for GeneMark_model.62407_t
Valid prediction for Augustus_model.g24393.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.193-T1
Valid prediction for GlimmerHMM_glimmerT_36285-T1
Valid prediction for GeneMark_model.62416_t
Valid prediction for snap_scaffold_15-snap.197-T1
Valid prediction for snap_scaffold_15-snap.214-T1
Sorry, intron length (8) is less than minimum required (10)
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for pasa_asmbl_15959.p1
Valid prediction for snap_scaffold_15-snap.183-T1
Valid prediction for snap_scaffold_15-snap.188-T1
Valid prediction for snap_scaffold_15-snap.200-T1
Valid prediction for snap_scaffold_15-snap.210-T1
Valid prediction for Augustus_model.g24406.t1
Valid prediction for GeneMark_model.62418_t
Valid prediction for GlimmerHMM_glimmerT_36294-T1
Valid prediction for GlimmerHMM_glimmerT_36300-T1
Valid prediction for Augustus_model.g24398.t1
Valid prediction for snap_scaffold_15-snap.191-T1
Valid prediction for snap_scaffold_15-snap.212-T1
Valid prediction for GlimmerHMM_glimmerT_36296-T1
Valid prediction for GeneMark_model.62424_t
Valid prediction for snap_scaffold_15-snap.185-T1
Valid prediction for GeneMark_model.62411_t
Valid prediction for GeneMark_model.62426_t
Valid prediction for GeneMark_model.62400_t
Valid prediction for snap_scaffold_15-snap.207-T1
Valid prediction for GlimmerHMM_glimmerT_36292-T1
Valid prediction for snap_scaffold_15-snap.181-T1
Valid prediction for Augustus_model.g24407.t1
Valid prediction for snap_scaffold_15-snap.184-T1
Valid prediction for GlimmerHMM_glimmerT_36284-T1
Valid prediction for GeneMark_model.62432_t
Valid prediction for GlimmerHMM_glimmerT_36301-T1
Valid prediction for CodingQuarry_transcript_17855-T1
Valid prediction for GeneMark_model.62417_t
Valid prediction for GlimmerHMM_glimmerT_36282-T1
Valid prediction for GeneMark_model.62422_t
Valid prediction for GlimmerHMM_glimmerT_36283-T1
Valid prediction for GeneMark_model.62413_t
Valid prediction for snap_scaffold_15-snap.194-T1
Valid prediction for GeneMark_model.62427_t
Valid prediction for GeneMark_model.62433_t
Valid prediction for GeneMark_model.62431_t
Valid prediction for HiQ_model.g24400.t1
Valid prediction for GlimmerHMM_glimmerT_36295-T1
Valid prediction for Augustus_model.g24405.t1
Valid prediction for HiQ_model.g24401.t1
Valid prediction for GlimmerHMM_glimmerT_36287-T1
Valid prediction for snap_scaffold_15-snap.211-T1
Valid prediction for GeneMark_model.62420_t
Valid prediction for GeneMark_model.62430_t
Valid prediction for snap_scaffold_15-snap.215-T1
Valid prediction for GeneMark_model.62434_t
Valid prediction for GeneMark_model.62404_t
Valid prediction for Augustus_model.g24404.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25270, rend_intergenic: 23452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46795, rend_intergenic: 44158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85040, rend_intergenic: 83876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87590, rend_intergenic: 85646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95367, rend_intergenic: 93359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97567, rend_intergenic: 95957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193825
-exon list size: 468


building trellis

0.2    
0.4    
0.6    
0.9    
1.1    
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1.5    
1.7    
1.9    
2.1    
2.3    
2.6    
2.8    
3.0    
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3.4    
3.6    
3.8    
4.0    
4.3    
4.5    
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5.1    
5.3    
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5.7    
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6.8    
7.0    
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7.9    
8.1    
8.3    
8.5    
8.7    
8.9    
9.1    
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9.6    
9.8    
10.0    
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10.4    
10.6    
10.9    
11.1    
11.3    
11.5    
11.7    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
14.0    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
16.0    
16.2    
16.4    
16.6    
16.8    
17.0    
17.2    
17.4    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.4    
19.6    
19.8    
20.0    
20.2    
20.4    
20.6    
20.9    
21.1    
21.3    
21.5    
21.7    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
26.0    
26.2    
26.4    
26.6    
26.8    
27.0    
27.2    
27.4    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
36.0    
36.2    
36.4    
36.6    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.4    
39.6    
39.8    
40.0    
40.2    
40.4    
40.6    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.7    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.4    
59.6    
59.8    
60.0    
60.2    
60.4    
60.6    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.4    
63.6    
63.8    
64.0    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.4    
79.6    
79.8    
80.0    
80.2    
80.4    
80.6    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.4    
99.6    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 25270, rend_intergenic: 23452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46795, rend_intergenic: 44158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85040, rend_intergenic: 83876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87590, rend_intergenic: 85646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95367, rend_intergenic: 93359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97567, rend_intergenic: 95957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 178339 - 193825
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 178526 - 193825
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support