-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_5315511-5508435 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g24791.t1 Valid prediction for GeneMark_model.63588_t Valid prediction for GeneMark_model.63606_t Valid prediction for GeneMark_model.63568_t Valid prediction for GeneMark_model.63589_t Valid prediction for CodingQuarry_transcript_17969-T1 Valid prediction for GeneMark_model.63566_t Valid prediction for GeneMark_model.63572_t Valid prediction for Augustus_model.g24799.t1 Valid prediction for GlimmerHMM_glimmerT_36967-T1 Valid prediction for GeneMark_model.63604_t Valid prediction for snap_scaffold_15-snap.1164-T1 Valid prediction for snap_scaffold_15-snap.1181-T1 Valid prediction for snap_scaffold_15-snap.1161-T1 Couldn't classify 178139, 178297 Sorry, prediction pasa_asmbl_14150.p1 fails validation. (ATG) AC 176587-176608 GT AAG (GTG) AG 176858-176957 GT AAG (AGT) AG 177050-177188 GT GGG (ATA) AG 177351-177421 GT GTG (TTA) AG 177801-177864 GT AGG (CCA) AG 177961-178029 GT AGG (CTG) AG 178139-178297 AC ACA -recovered pasa_asmbl_14150.p1, initial, 176587, 176608 -recovered pasa_asmbl_14150.p1, internal, 176858, 176957 -recovered pasa_asmbl_14150.p1, internal, 177050, 177188 -recovered pasa_asmbl_14150.p1, internal, 177351, 177421 -recovered pasa_asmbl_14150.p1, internal, 177801, 177864 -recovered pasa_asmbl_14150.p1, internal, 177961, 178029 Valid prediction for snap_scaffold_15-snap.1180-T1 Valid prediction for GeneMark_model.63570_t Valid prediction for GeneMark_model.63564_t Valid prediction for GeneMark_model.63600_t Valid prediction for Augustus_model.g24797.t1 Valid prediction for snap_scaffold_15-snap.1165-T1 Valid prediction for HiQ_model.g24807.t1 Valid prediction for GeneMark_model.63603_t Valid prediction for snap_scaffold_15-snap.1157-T1 Valid prediction for GlimmerHMM_glimmerT_36959-T1 Valid prediction for snap_scaffold_15-snap.1159-T1 Valid prediction for GlimmerHMM_glimmerT_36945-T1 Valid prediction for GeneMark_model.63593_t Valid prediction for GeneMark_model.63590_t Valid prediction for GeneMark_model.63583_t Couldn't classify 152094, 152356 Couldn't classify 155759, 155775 Sorry, prediction pasa_asmbl_14147.p1 fails validation. (TTC) AG 152094-152356 GT AGG (GAG) AG 153192-153277 GT AGG (GGA) AG 153360-153470 GT AGG (GTG) AG 154155-154308 GT AGG (TTA) AG 154493-154575 GT AGG (GGA) AG 155251-155346 GT AGG (AAG) AG 155759-155775 AC AGA -recovered pasa_asmbl_14147.p1, terminal, 155251, 155346 -recovered pasa_asmbl_14147.p1, internal, 152094, 152356 -recovered pasa_asmbl_14147.p1, internal, 153192, 153277 -recovered pasa_asmbl_14147.p1, internal, 153360, 153470 -recovered pasa_asmbl_14147.p1, internal, 154155, 154308 -recovered pasa_asmbl_14147.p1, internal, 154493, 154575 -recovered pasa_asmbl_14147.p1, internal, 155251, 155346 Valid prediction for GeneMark_model.63579_t Valid prediction for GeneMark_model.63594_t Valid prediction for GlimmerHMM_glimmerT_36944-T1 Valid prediction for CodingQuarry_transcript_17962-T1 Valid prediction for snap_scaffold_15-snap.1162-T1 Valid prediction for Augustus_model.g24805.t1 Couldn't classify 29766, 29864 Sorry, prediction pasa_asmbl_14141.p1 fails validation. (ATT) TG 29766-29864 GT AGG (ATC) AG 30250-30345 GT AGG (GTA) AG 30533-30836 GT ACG (CTG) AG 31096-31217 TC AGT -recovered pasa_asmbl_14141.p1, terminal, 31096, 31217 -recovered pasa_asmbl_14141.p1, internal, 30250, 30345 -recovered pasa_asmbl_14141.p1, internal, 30533, 30836 Valid prediction for Augustus_model.g24796.t1 Valid prediction for Augustus_model.g24800.t1 Valid prediction for snap_scaffold_15-snap.1158-T1 Valid prediction for GeneMark_model.63610_t Valid prediction for snap_scaffold_15-snap.1193-T1 Valid prediction for GeneMark_model.63596_t Valid prediction for snap_scaffold_15-snap.1176-T1 Valid prediction for GlimmerHMM_glimmerT_36955-T1 Valid prediction for GeneMark_model.63598_t Valid prediction for snap_scaffold_15-snap.1171-T1 Valid prediction for snap_scaffold_15-snap.1190-T1 Valid prediction for snap_scaffold_15-snap.1174-T1 Valid prediction for GeneMark_model.63581_t Valid prediction for GlimmerHMM_glimmerT_36966-T1 Valid prediction for GlimmerHMM_glimmerT_36963-T1 Valid prediction for snap_scaffold_15-snap.1173-T1 Valid prediction for GeneMark_model.63585_t Couldn't classify 179583, 179644 Sorry, prediction pasa_asmbl_14151.p1 fails validation. (ATC) TC 179583-179644 GT AGG (GTA) AG 182009-182170 GT AGG (AGG) AG 182616-182742 GT TAG (GAG) AG 184262-184455 GT AGG (GGA) AG 184575-184665 GT AGG (TGT) AG 184797-184862 GT AGG (GTG) AG 184992-185219 GT AGG (GGC) AG 185340-185421 GT CGG (GTG) AG 185520-185611 GA GAG -recovered pasa_asmbl_14151.p1, terminal, 185520, 185611 -recovered pasa_asmbl_14151.p1, internal, 182009, 182170 -recovered pasa_asmbl_14151.p1, internal, 182616, 182742 -recovered pasa_asmbl_14151.p1, internal, 184262, 184455 -recovered pasa_asmbl_14151.p1, internal, 184575, 184665 -recovered pasa_asmbl_14151.p1, internal, 184797, 184862 -recovered pasa_asmbl_14151.p1, internal, 184992, 185219 -recovered pasa_asmbl_14151.p1, internal, 185340, 185421 Valid prediction for GeneMark_model.63577_t Valid prediction for CodingQuarry_transcript_17960-T1 Valid prediction for Augustus_model.g24793.t1 Valid prediction for GeneMark_model.63595_t Valid prediction for snap_scaffold_15-snap.1191-T1 Valid prediction for CodingQuarry_transcript_17965-T1 Valid prediction for GlimmerHMM_glimmerT_36964-T1 Valid prediction for GlimmerHMM_glimmerT_36957-T1 Valid prediction for snap_scaffold_15-snap.1166-T1 Valid prediction for snap_scaffold_15-snap.1177-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_15226.p1 Valid prediction for snap_scaffold_15-snap.1154-T1 Couldn't classify 28937, 29035 Sorry, prediction pasa_asmbl_15227.p1 fails validation. (CCG) AC 28937-29035 GT AGG (GTG) AG 29122-29298 GT AGG (GGC) AG 29393-29485 GT GGG (GAT) AG 29596-29748 GT AGG (GAG) AG 29878-29955 GT GGG (GGC) AG 30452-30545 GT CGG (GTC) AG 30903-31021 GT AGG (AAC) AG 31223-31285 GT TGG (GTC) AG 31388-32834 GT AGG (GGA) AG 32986-33242 GG GAG -recovered pasa_asmbl_15227.p1, terminal, 32986, 33242 -recovered pasa_asmbl_15227.p1, internal, 29122, 29298 -recovered pasa_asmbl_15227.p1, internal, 29393, 29485 -recovered pasa_asmbl_15227.p1, internal, 29596, 29748 -recovered pasa_asmbl_15227.p1, internal, 29878, 29955 -recovered pasa_asmbl_15227.p1, internal, 30452, 30545 -recovered pasa_asmbl_15227.p1, internal, 30903, 31021 -recovered pasa_asmbl_15227.p1, internal, 31223, 31285 -recovered pasa_asmbl_15227.p1, internal, 31388, 32834 Valid prediction for Augustus_model.g24798.t1 Valid prediction for CodingQuarry_transcript_17967-T1 Valid prediction for GeneMark_model.63565_t Valid prediction for GeneMark_model.63602_t Valid prediction for snap_scaffold_15-snap.1163-T1 Valid prediction for snap_scaffold_15-snap.1195-T1 Valid prediction for Augustus_model.g24795.t1 Valid prediction for GeneMark_model.63611_t Valid prediction for snap_scaffold_15-snap.1189-T1 Valid prediction for Augustus_model.g24790.t1 Valid prediction for GlimmerHMM_glimmerT_36947-T1 Valid prediction for snap_scaffold_15-snap.1192-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for GeneMark_model.63592_t Valid prediction for GeneMark_model.63575_t Valid prediction for GeneMark_model.63609_t Valid prediction for GlimmerHMM_glimmerT_36948-T1 Valid prediction for GlimmerHMM_glimmerT_36961-T1 Valid prediction for CodingQuarry_transcript_17966-T1 Valid prediction for GeneMark_model.63573_t Valid prediction for GlimmerHMM_glimmerT_36952-T1 Couldn't classify 98905, 99009 Couldn't classify 125745, 125875 Sorry, prediction pasa_asmbl_15213.p1 fails validation. (TAT) AG 98905-99009 GT GGG (AGT) AG 100217-100237 GT GGG (GCT) AG 102572-102646 GT TGG (TAC) AG 102950-103028 GT AGG (GAG) AG 103466-103578 GT TGG (CAC) AG 104918-105111 GT AGG (GAT) AG 105571-105645 GT AGG (CTG) AG 106467-106623 GT AGG (GAG) AG 107576-107740 GT GGG (GCC) AG 108538-108659 GT AGG (GGG) AG 108761-108941 GT AGG (GGC) AG 109223-109358 GT GGG (CTT) AG 110512-110607 GT AGG (GAA) AG 110728-110846 GT AGG (ATC) AG 111766-111899 GT AGG (TAT) AG 112150-112391 GT AGG (GCC) AG 113653-113845 GT AAG (GGT) AG 114177-114393 GT AGG (ACT) AG 114536-114640 GT AGG (GTT) AG 116037-116140 GT AAG (AAC) AG 116711-116794 GT GAG (CTA) AG 117444-117603 GT AGG (GAT) AG 117783-117927 GT GGG (CCT) AG 118059-118264 GT GGG (GGT) AG 118406-118580 GT CGG (GGT) AG 118836-119044 GT AGG (GTG) AG 119371-119534 GT AGG (TCA) AG 119677-119725 GT GGG (TAC) AG 119992-120152 GC AGG (TGT) AG 121352-121508 GT AGG (GTG) AG 122233-122319 GT AGG (GAC) AG 122519-122745 GT AGG (GTG) AG 122960-123172 GT AGG (CAT) AG 123303-123909 GT AGG (ATG) AG 124012-124212 GT AGG (ATT) AG 125462-125564 GT CGG (GCA) AG 125745-125875 AG CCA -recovered pasa_asmbl_15213.p1, initial, 124012, 124212 add_exon() Sorry, pasa_asmbl_15213.p1 102950-103028-terminal-3 is invalid. -recovered pasa_asmbl_15213.p1, terminal, 102950, 103028 -recovered pasa_asmbl_15213.p1, internal, 98905, 99009 -recovered pasa_asmbl_15213.p1, internal, 100217, 100237 -recovered pasa_asmbl_15213.p1, internal, 102572, 102646 -recovered pasa_asmbl_15213.p1, internal, 102950, 103028 -recovered pasa_asmbl_15213.p1, internal, 103466, 103578 -recovered pasa_asmbl_15213.p1, internal, 104918, 105111 -recovered pasa_asmbl_15213.p1, internal, 105571, 105645 -recovered pasa_asmbl_15213.p1, internal, 106467, 106623 -recovered pasa_asmbl_15213.p1, internal, 107576, 107740 -recovered pasa_asmbl_15213.p1, internal, 108538, 108659 -recovered pasa_asmbl_15213.p1, internal, 108761, 108941 -recovered pasa_asmbl_15213.p1, internal, 109223, 109358 -recovered pasa_asmbl_15213.p1, internal, 110512, 110607 -recovered pasa_asmbl_15213.p1, internal, 110728, 110846 -recovered pasa_asmbl_15213.p1, internal, 111766, 111899 -recovered pasa_asmbl_15213.p1, internal, 112150, 112391 -recovered pasa_asmbl_15213.p1, internal, 113653, 113845 -recovered pasa_asmbl_15213.p1, internal, 114177, 114393 -recovered pasa_asmbl_15213.p1, internal, 114536, 114640 -recovered pasa_asmbl_15213.p1, internal, 116037, 116140 -recovered pasa_asmbl_15213.p1, internal, 116711, 116794 -recovered pasa_asmbl_15213.p1, internal, 117444, 117603 -recovered pasa_asmbl_15213.p1, internal, 117783, 117927 -recovered pasa_asmbl_15213.p1, internal, 118059, 118264 -recovered pasa_asmbl_15213.p1, internal, 118406, 118580 -recovered pasa_asmbl_15213.p1, internal, 118836, 119044 -recovered pasa_asmbl_15213.p1, internal, 119371, 119534 -recovered pasa_asmbl_15213.p1, internal, 119677, 119725 -recovered pasa_asmbl_15213.p1, internal, 119992, 120152 -recovered pasa_asmbl_15213.p1, internal, 121352, 121508 -recovered pasa_asmbl_15213.p1, internal, 122233, 122319 -recovered pasa_asmbl_15213.p1, internal, 122519, 122745 -recovered pasa_asmbl_15213.p1, internal, 122960, 123172 -recovered pasa_asmbl_15213.p1, internal, 123303, 123909 -recovered pasa_asmbl_15213.p1, internal, 124012, 124212 -recovered pasa_asmbl_15213.p1, internal, 125462, 125564 Valid prediction for GeneMark_model.63587_t Valid prediction for GlimmerHMM_glimmerT_36949-T1 Couldn't classify 22648, 22743 Sorry, prediction pasa_asmbl_15231.p1 fails validation. (ATG) AC 21721-21767 GT GGG (CAG) AG 22016-22103 GT AGG (GAC) AG 22381-22515 GT CGG (ACG) AG 22648-22743 GG AAG -recovered pasa_asmbl_15231.p1, initial, 21721, 21767 -recovered pasa_asmbl_15231.p1, internal, 22016, 22103 -recovered pasa_asmbl_15231.p1, internal, 22381, 22515 Valid prediction for snap_scaffold_15-snap.1185-T1 Valid prediction for Augustus_model.g24808.t1 Couldn't classify 25760, 25840 Couldn't classify 28230, 28313 Sorry, prediction pasa_asmbl_15229.p1 fails validation. (ATC) TC 25760-25840 GT AGG (CGT) AG 26062-26208 GT CTG (GTG) AG 26516-26665 GT AGG (GTG) AG 26855-26965 GT TGG (GTG) AG 27062-27238 GT TGG (GAG) AG 27377-27534 GT AGG (GTG) AG 27627-27759 GT AGG (GGC) AG 27846-27992 GT AGG (CTG) AG 28083-28112 GT AGG (GAG) AG 28230-28313 AT AGA -recovered pasa_asmbl_15229.p1, internal, 26062, 26208 -recovered pasa_asmbl_15229.p1, internal, 26516, 26665 -recovered pasa_asmbl_15229.p1, internal, 26855, 26965 -recovered pasa_asmbl_15229.p1, internal, 27062, 27238 -recovered pasa_asmbl_15229.p1, internal, 27377, 27534 -recovered pasa_asmbl_15229.p1, internal, 27627, 27759 -recovered pasa_asmbl_15229.p1, internal, 27846, 27992 -recovered pasa_asmbl_15229.p1, internal, 28083, 28112 Valid prediction for snap_scaffold_15-snap.1169-T1 Valid prediction for GlimmerHMM_glimmerT_36951-T1 Valid prediction for GeneMark_model.63591_t Valid prediction for GeneMark_model.63601_t Valid prediction for Augustus_model.g24792.t1 Valid prediction for CodingQuarry_transcript_17964-T1 Valid prediction for snap_scaffold_15-snap.1155-T1 Valid prediction for GeneMark_model.63586_t Valid prediction for GeneMark_model.63608_t Valid prediction for snap_scaffold_15-snap.1156-T1 Valid prediction for HiQ_model.g24794.t1 Valid prediction for snap_scaffold_15-snap.1172-T1 Valid prediction for GlimmerHMM_glimmerT_36968-T1 Valid prediction for snap_scaffold_15-snap.1186-T1 Valid prediction for GlimmerHMM_glimmerT_36953-T1 Valid prediction for snap_scaffold_15-snap.1187-T1 Valid prediction for HiQ_model.g24804.t1 Valid prediction for GlimmerHMM_glimmerT_36969-T1 Valid prediction for GlimmerHMM_glimmerT_36946-T1 Valid prediction for snap_scaffold_15-snap.1179-T1 Valid prediction for snap_scaffold_15-snap.1182-T1 Valid prediction for snap_scaffold_15-snap.1170-T1 Valid prediction for GlimmerHMM_glimmerT_36956-T1 Valid prediction for Augustus_model.g24801.t1 Valid prediction for GeneMark_model.63571_t Valid prediction for snap_scaffold_15-snap.1167-T1 Valid prediction for GeneMark_model.63562_t Valid prediction for snap_scaffold_15-snap.1188-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_36950-T1 Valid prediction for snap_scaffold_15-snap.1194-T1 Valid prediction for GeneMark_model.63580_t Valid prediction for GeneMark_model.63574_t Valid prediction for GlimmerHMM_glimmerT_36962-T1 Valid prediction for GlimmerHMM_glimmerT_36958-T1 Valid prediction for GeneMark_model.63576_t Valid prediction for GlimmerHMM_glimmerT_36965-T1 Valid prediction for pasa_asmbl_15212.p1 Valid prediction for GeneMark_model.63567_t Valid prediction for snap_scaffold_15-snap.1183-T1 Couldn't classify 129299, 129570 Couldn't classify 138965, 139027 Sorry, prediction pasa_asmbl_15939.p1 fails validation. (AAC) CC 129299-129570 GT GGG (GGA) AG 129755-129869 GT AGG (GAA) AG 131265-131397 GT GGG (CCT) AG 132599-132702 GT AGG (GTG) AG 132824-132959 GT CGG (GTG) AG 133060-133243 GT GGG (GCT) AG 133381-133489 GT ATG (CTC) AG 133706-133826 GT AGG (ACG) AG 134600-134769 GT CGG (GAG) AG 134926-135146 GT TCG (ACA) AG 136911-137001 GT GGG (CTG) AG 137204-137344 GT AGG (AAG) AG 138001-138164 GT AAG (CAT) AG 138283-138361 GT AGG (CTG) AG 138519-138608 GT AGG (GAG) AG 138726-138869 GT CAG (GAG) AG 138965-139027 GT AGG -recovered pasa_asmbl_15939.p1, internal, 129755, 129869 -recovered pasa_asmbl_15939.p1, internal, 131265, 131397 -recovered pasa_asmbl_15939.p1, internal, 132599, 132702 -recovered pasa_asmbl_15939.p1, internal, 132824, 132959 -recovered pasa_asmbl_15939.p1, internal, 133060, 133243 -recovered pasa_asmbl_15939.p1, internal, 133381, 133489 -recovered pasa_asmbl_15939.p1, internal, 133706, 133826 -recovered pasa_asmbl_15939.p1, internal, 134600, 134769 -recovered pasa_asmbl_15939.p1, internal, 134926, 135146 -recovered pasa_asmbl_15939.p1, internal, 136911, 137001 -recovered pasa_asmbl_15939.p1, internal, 137204, 137344 -recovered pasa_asmbl_15939.p1, internal, 138001, 138164 -recovered pasa_asmbl_15939.p1, internal, 138283, 138361 -recovered pasa_asmbl_15939.p1, internal, 138519, 138608 -recovered pasa_asmbl_15939.p1, internal, 138726, 138869 -recovered pasa_asmbl_15939.p1, internal, 138965, 139027 Valid prediction for CodingQuarry_transcript_17963-T1 Valid prediction for GeneMark_model.63607_t Couldn't classify 188841, 189103 Sorry, prediction pasa_asmbl_15203.p1 fails validation. (ATG) CA 184036-184043 GT TTG (TCC) AG 184976-185146 GT AGG (GAT) AG 185665-185731 GT AGG (AAC) AG 185833-185914 GT AGG (GTG) AG 186026-186135 GT GGG (GCT) AG 186270-186323 GT AGG (ATT) AG 186480-186591 GT TGG (GTT) AG 186831-186920 GT ACG (GAC) AG 187827-187965 GT TGG (GGA) AG 188113-188185 GT GGG (GTG) AG 188324-188444 GT GGG (GCC) AG 188841-189103 AA TCA -recovered pasa_asmbl_15203.p1, initial, 184036, 184043 -recovered pasa_asmbl_15203.p1, internal, 184976, 185146 -recovered pasa_asmbl_15203.p1, internal, 185665, 185731 -recovered pasa_asmbl_15203.p1, internal, 185833, 185914 -recovered pasa_asmbl_15203.p1, internal, 186026, 186135 -recovered pasa_asmbl_15203.p1, internal, 186270, 186323 -recovered pasa_asmbl_15203.p1, internal, 186480, 186591 -recovered pasa_asmbl_15203.p1, internal, 186831, 186920 -recovered pasa_asmbl_15203.p1, internal, 187827, 187965 -recovered pasa_asmbl_15203.p1, internal, 188113, 188185 -recovered pasa_asmbl_15203.p1, internal, 188324, 188444 Valid prediction for GeneMark_model.63605_t Valid prediction for snap_scaffold_15-snap.1175-T1 Valid prediction for pasa_asmbl_15222.p2 Valid prediction for Augustus_model.g24802.t1 Valid prediction for GeneMark_model.63584_t Couldn't classify 24967, 25141 Couldn't classify 25257, 25429 Sorry, prediction pasa_asmbl_15230.p1 fails validation. (AGA) CC 24967-25141 GT CGG (ACC) AG 25257-25429 GC CCG -recovered pasa_asmbl_15230.p1, internal, 25257, 25429 Valid prediction for Augustus_model.g24803.t1 Valid prediction for snap_scaffold_15-snap.1184-T1 Valid prediction for snap_scaffold_15-snap.1160-T1 Valid prediction for snap_scaffold_15-snap.1168-T1 Valid prediction for GeneMark_model.63578_t Valid prediction for GeneMark_model.63582_t Valid prediction for GeneMark_model.63569_t Valid prediction for Augustus_model.g24806.t1 Valid prediction for GlimmerHMM_glimmerT_36960-T1 Valid prediction for GeneMark_model.63597_t Valid prediction for GlimmerHMM_glimmerT_36954-T1 Valid prediction for snap_scaffold_15-snap.1178-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43014, rend_intergenic: 33476 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44139, rend_intergenic: 43041 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61317, rend_intergenic: 47918 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70759, rend_intergenic: 61494 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89564, rend_intergenic: 80498 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100468, rend_intergenic: 93777 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101825, rend_intergenic: 100687 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103685, rend_intergenic: 102536 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115345, rend_intergenic: 111308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129876, rend_intergenic: 121048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185611, rend_intergenic: 178103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 192925 -exon list size: 795 building trellis 0.1 0.3 0.4 0.5 0.6 0.8 0.9 1.0 1.1 1.3 1.4 1.5 1.6 1.8 1.9 2.0 2.1 2.3 2.4 2.5 2.6 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.8 3.9 4.0 4.1 4.3 4.4 4.5 4.6 4.8 4.9 5.0 5.1 5.3 5.4 5.5 5.6 5.8 5.9 6.0 6.1 6.3 6.4 6.5 6.6 6.8 6.9 7.0 7.2 7.3 7.4 7.5 7.7 7.8 7.9 8.0 8.2 8.3 8.4 8.5 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.2 10.3 10.4 10.5 10.7 10.8 10.9 11.0 11.2 11.3 11.4 11.5 11.7 11.8 11.9 12.0 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.2 13.3 13.4 13.6 13.7 13.8 13.9 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.4 16.6 16.7 16.8 16.9 17.1 17.2 17.3 17.4 17.6 17.7 17.8 17.9 18.1 18.2 18.3 18.4 18.6 18.7 18.8 18.9 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.1 20.2 20.3 20.5 20.6 20.7 20.8 21.0 21.1 21.2 21.3 21.5 21.6 21.7 21.8 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.8 24.0 24.1 24.2 24.3 24.5 24.6 24.7 24.8 25.0 25.1 25.2 25.3 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.5 26.6 26.7 26.9 27.0 27.1 27.2 27.4 27.5 27.6 27.7 27.9 28.0 28.1 28.2 28.4 28.5 28.6 28.7 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.9 30.0 30.1 30.2 30.4 30.5 30.6 30.7 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.4 33.5 33.6 33.8 33.9 34.0 34.1 34.3 34.4 34.5 34.6 34.8 34.9 35.0 35.1 35.3 35.4 35.5 35.6 35.8 35.9 36.0 36.1 36.3 36.4 36.5 36.6 36.8 36.9 37.0 37.1 37.3 37.4 37.5 37.6 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.1 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.7 40.8 40.9 41.0 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.2 42.3 42.4 42.5 42.7 42.8 42.9 43.0 43.2 43.3 43.4 43.5 43.7 43.8 43.9 44.0 44.2 44.3 44.4 44.5 44.7 44.8 44.9 45.0 45.2 45.3 45.4 45.5 45.7 45.8 45.9 46.0 46.2 46.3 46.4 46.5 46.7 46.8 46.9 47.1 47.2 47.3 47.4 47.6 47.7 47.8 47.9 48.1 48.2 48.3 48.4 48.6 48.7 48.8 48.9 49.1 49.2 49.3 49.4 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.6 50.7 50.8 50.9 51.1 51.2 51.3 51.4 51.6 51.7 51.8 51.9 52.1 52.2 52.3 52.4 52.6 52.7 52.8 52.9 53.1 53.2 53.3 53.5 53.6 53.7 53.8 54.0 54.1 54.2 54.3 54.5 54.6 54.7 54.8 55.0 55.1 55.2 55.3 55.5 55.6 55.7 55.8 56.0 56.1 56.2 56.3 56.5 56.6 56.7 56.8 57.0 57.1 57.2 57.3 57.5 57.6 57.7 57.8 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 59.0 59.1 59.2 59.3 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.9 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.4 62.5 62.6 62.7 62.9 63.0 63.1 63.2 63.4 63.5 63.6 63.7 63.9 64.0 64.1 64.2 64.4 64.5 64.6 64.7 64.9 65.0 65.1 65.2 65.4 65.5 65.6 65.7 65.9 66.0 66.1 66.2 66.4 66.5 66.6 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.3 69.4 69.5 69.6 69.8 69.9 70.0 70.1 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.3 71.4 71.5 71.6 71.8 71.9 72.0 72.1 72.3 72.4 72.5 72.6 72.8 72.9 73.0 73.1 73.3 73.4 73.5 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.7 74.8 74.9 75.0 75.2 75.3 75.4 75.5 75.7 75.8 75.9 76.0 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.2 78.3 78.4 78.5 78.7 78.8 78.9 79.0 79.2 79.3 79.4 79.5 79.7 79.8 79.9 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.1 81.2 81.3 81.4 81.6 81.7 81.8 81.9 82.1 82.2 82.3 82.4 82.6 82.7 82.8 82.9 83.1 83.2 83.3 83.4 83.6 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.1 86.2 86.3 86.4 86.6 86.7 86.8 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 88.0 88.1 88.2 88.3 88.5 88.6 88.7 88.8 89.0 89.1 89.2 89.3 89.5 89.6 89.7 89.8 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.5 91.6 91.7 91.8 92.0 92.1 92.2 92.3 92.5 92.6 92.7 92.8 93.0 93.1 93.2 93.4 93.5 93.6 93.7 93.9 94.0 94.1 94.2 94.4 94.5 94.6 94.7 94.9 95.0 95.1 95.2 95.4 95.5 95.6 95.7 95.9 96.0 96.1 96.2 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.4 97.5 97.6 97.7 97.9 98.0 98.1 98.2 98.4 98.5 98.6 98.7 98.9 99.0 99.1 99.2 99.4 99.5 99.6 99.7 99.9 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 43014, rend_intergenic: 33476 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44139, rend_intergenic: 43041 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61317, rend_intergenic: 47918 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70759, rend_intergenic: 61494 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89564, rend_intergenic: 80498 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100468, rend_intergenic: 93777 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101825, rend_intergenic: 100687 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103685, rend_intergenic: 102536 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115345, rend_intergenic: 111308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129876, rend_intergenic: 121048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185611, rend_intergenic: 178103 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support